genome.fa.s2066.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002066.1 Hibiscus syriacus cultivar Beakdansim tig00004217_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  180234

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3416--3462	23	2.0	23	100	0	94	53	8	8	29	1.61
14825--14945	35	3.4	36	77	10	131	35	4	16	43	1.67
15337--15369	16	2.0	17	94	5	59	39	0	18	42	1.50
19434--19494	21	3.2	21	65	29	64	31	4	21	42	1.74
19426--19545	35	3.3	36	88	6	172	32	5	19	43	1.72
20513--20556	19	2.3	19	96	0	79	18	4	43	34	1.70
21629--21686	31	1.9	30	85	3	80	51	3	0	44	1.18
22000--22057	31	1.9	30	89	6	91	56	6	12	24	1.59
32127--32176	21	2.4	21	100	0	100	28	10	10	52	1.67
34860--34903	15	2.9	15	86	0	61	31	31	20	15	1.94
35509--35580	35	2.0	36	91	5	119	22	30	29	18	1.97
36738--36775	3	12.7	3	88	0	58	28	31	0	39	1.57
36738--36775	12	3.2	12	96	0	67	28	31	0	39	1.57
37935--37976	15	2.8	15	85	0	57	30	2	47	19	1.62
38394--38873	182	2.6	182	90	0	764	26	15	12	45	1.82
38712--39033	163	2.0	163	88	2	477	27	13	13	46	1.80
38875--39684	181	4.5	179	86	3	1023	27	14	12	44	1.82
38875--39685	180	4.5	181	86	3	985	27	14	13	44	1.82
40177--40240	2	32.0	2	100	0	128	50	0	0	50	1.00
49752--49812	30	2.0	30	93	0	104	67	9	6	16	1.40
50150--50203	27	2.0	26	86	10	74	38	9	3	48	1.53
51052--51104	22	2.5	22	75	9	56	49	11	5	33	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59525--59561	17	2.2	17	90	4	58	51	8	2	37	1.46
59572--59609	14	2.7	14	80	15	51	68	2	2	26	1.16
59966--60004	20	1.9	21	89	5	62	46	0	0	53	1.00
73054--73204	42	3.6	42	95	1	270	20	19	23	37	1.95
73112--73246	63	2.1	61	84	7	180	20	18	24	36	1.95
73054--73225	21	8.3	21	75	15	144	20	18	22	38	1.94
73133--73255	63	2.0	63	95	0	219	21	18	21	38	1.94
73338--73362	6	4.2	6	100	0	50	36	48	16	0	1.46
74095--74163	19	3.4	21	74	18	74	37	21	20	20	1.94
74088--74183	40	2.3	42	92	3	160	34	22	19	22	1.97
74088--74183	21	4.7	20	75	12	88	34	22	19	22	1.97
74656--74700	23	2.0	23	82	8	56	31	4	2	62	1.27
78346--78409	24	2.7	24	85	0	74	21	14	14	50	1.78
81991--82024	17	2.0	17	94	0	59	47	2	2	47	1.32
82040--82081	16	2.5	17	80	7	50	38	0	11	50	1.40
87698--87766	19	3.7	19	75	9	63	59	5	0	34	1.21
91729--91792	30	2.1	31	88	8	96	25	25	0	50	1.50
102449--102482	2	17.0	2	93	0	59	50	0	2	47	1.16
112942--112984	22	2.0	20	82	8	50	55	0	4	39	1.20
114485--114553	30	2.2	30	85	15	95	34	5	17	42	1.73
114494--114553	30	2.0	30	93	6	104	33	6	16	43	1.74
114633--114731	21	4.8	20	80	13	119	23	35	19	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114666--114731	13	4.8	14	72	18	50	22	36	19	21	1.95
116023--116070	19	2.5	20	82	3	62	52	6	12	29	1.63
117292--117360	30	2.2	30	82	15	86	33	5	18	42	1.75
117301--117360	30	2.0	30	90	6	95	31	6	18	43	1.76
117440--117538	21	4.8	20	83	10	110	23	33	20	23	1.97
117482--117524	22	1.9	23	90	4	70	27	30	20	20	1.98
117559--117635	21	3.7	21	91	1	111	22	22	24	31	1.98
117559--117653	41	2.3	41	81	3	102	21	23	24	31	1.98
118944--118978	17	2.1	17	100	0	70	17	25	34	22	1.96
119315--119385	24	2.9	24	85	10	99	39	11	18	30	1.86
119657--119689	17	2.0	17	88	5	50	39	0	0	60	0.97
125528--125656	57	2.3	57	87	0	186	34	22	13	29	1.92
126362--126386	11	2.3	11	100	0	50	36	8	8	48	1.62
127443--127537	2	52.5	2	70	22	50	57	0	1	41	1.05
127450--127508	18	3.4	18	84	11	88	62	0	1	35	1.05
127460--127513	7	7.7	7	76	15	58	64	0	1	33	1.04
127450--127538	16	5.5	16	73	16	67	59	0	1	39	1.05
127442--127523	34	2.4	34	87	2	130	59	0	1	39	1.05
129772--129839	17	4.2	17	75	21	58	70	0	1	27	0.96
129816--129857	20	2.0	21	86	4	59	69	4	0	26	1.08
129781--129866	35	2.4	35	84	9	102	66	2	2	29	1.16
129992--130021	14	2.1	14	100	0	60	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147508--147556	2	24.5	2	100	0	98	48	0	0	51	1.00
153607--153732	45	2.9	42	79	11	121	40	11	15	32	1.83
156912--156954	22	1.9	23	85	4	61	39	11	2	46	1.53
157301--157328	2	14.0	2	100	0	56	50	0	0	50	1.00
157921--157951	15	2.1	15	93	0	53	16	25	3	54	1.56
163207--163245	10	3.8	10	80	6	51	53	0	0	46	1.00
173816--173849	13	2.6	13	86	13	52	47	0	0	52	1.00

Tables:   1

The End!