Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002067.1 Hibiscus syriacus cultivar Beakdansim tig00004219_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110386

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9044--9116
22
3.3
23
68
12
71
45
9
4
41
1.56
9049--9139
45
2.0
45
100
0
182
47
8
4
39
1.55
11056--11082
14
1.9
14
100
0
54
81
0
0
18
0.69
13543--13569
13
2.1
13
100
0
54
22
25
14
37
1.93
16552--16585
6
5.8
6
96
3
61
29
52
17
0
1.45
17072--17112
5
7.6
5
91
8
55
0
19
56
24
1.42
17209--17286
21
3.8
21
75
10
79
33
25
17
23
1.96
17295--17431
21
6.6
21
82
8
154
21
21
24
32
1.98
17276--17415
41
3.4
41
75
16
137
22
21
22
33
1.97
17269--17394
62
2.0
62
98
0
243
23
22
20
33
1.97
17254--17417
83
2.0
83
82
9
201
24
21
21
31
1.98
17272--17411
62
2.3
62
92
2
228
23
21
21
33
1.97
28763--29082
168
1.9
162
86
6
446
40
5
4
50
1.44
31833--31871
18
2.2
18
90
0
60
41
7
41
10
1.68
32305--32358
24
2.2
24
77
6
56
9
14
27
48
1.75
32315--32347
14
2.4
14
94
0
57
6
12
27
54
1.60
32316--32390
24
3.1
24
86
3
89
12
9
21
57
1.62
33114--33188
10
7.7
10
67
21
52
8
12
22
57
1.60
33120--33184
16
4.1
16
93
0
112
6
12
24
56
1.58
33254--33286
16
2.1
16
100
0
66
6
12
24
57
1.57
34466--34504
17
2.4
17
95
4
71
51
5
0
43
1.24
41566--41596
13
2.4
13
94
0
53
80
0
3
16
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43651--43679
2
14.5
2
100
0
58
51
0
0
48
1.00
48810--48847
20
1.9
20
88
0
58
44
21
10
23
1.83
49382--49434
21
2.7
19
75
16
54
45
11
3
39
1.58
49389--49439
21
2.4
21
96
0
93
43
11
3
41
1.60
49554--49602
19
2.6
19
93
0
80
38
4
20
36
1.72
50580--50997
41
10.2
40
70
15
221
32
19
17
30
1.95
50584--50814
123
1.9
123
82
8
290
32
20
18
28
1.96
50598--50950
164
2.1
165
86
3
487
32
19
17
30
1.95
50580--50847
123
2.2
123
79
9
289
30
20
19
28
1.97
57033--57077
21
2.1
21
95
0
81
24
4
15
55
1.59
57214--57505
43
6.8
43
92
0
467
24
25
17
32
1.97
73349--73382
2
17.0
2
100
0
68
50
0
0
50
1.00
78087--78216
20
6.5
20
95
0
224
56
12
9
22
1.64
83899--83937
15
2.7
15
92
4
62
33
15
7
43
1.75
105897--105952
15
3.9
15
68
27
50
60
5
0
33
1.19
106017--106063
19
2.5
19
100
0
94
57
0
14
27
1.38

Tables:   1

The End!