genome.fa.s2069.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002069.1 Hibiscus syriacus cultivar Beakdansim tig00004222_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68307

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3088--3127	12	3.3	12	80	13	55	17	27	32	22	1.96
6073--6231	47	3.4	47	87	1	230	24	23	8	44	1.80
6095--6291	27	8.1	26	65	26	112	24	22	9	43	1.82
6144--6291	74	2.0	74	89	2	226	22	22	9	44	1.82
6660--6845	92	2.0	92	86	2	257	25	22	16	36	1.94
12169--12199	15	2.0	16	93	6	55	58	16	0	25	1.38
12983--13138	27	6.3	27	72	19	151	21	24	11	42	1.85
12933--13110	47	3.8	47	90	2	250	22	22	10	44	1.83
12929--13110	94	1.9	96	91	4	298	22	23	10	43	1.83
13004--13191	74	2.7	67	81	10	250	20	26	11	42	1.86
13004--13084	20	3.7	20	72	20	72	19	28	11	40	1.86
13125--13178	20	2.7	20	97	0	99	18	31	12	37	1.89
13728--13777	20	2.5	20	93	0	91	28	28	14	30	1.95
19869--19986	47	2.5	47	84	2	157	27	20	9	43	1.82
22345--22372	11	2.5	11	100	0	56	17	0	0	82	0.68
24854--24907	21	2.6	20	80	8	63	24	22	20	33	1.97
24891--24929	20	2.0	20	94	0	69	38	23	20	17	1.93
25115--25190	22	3.5	22	83	0	80	25	36	15	22	1.93
25566--25620	20	2.8	20	91	0	83	10	16	23	49	1.77
25585--25628	20	2.2	20	87	0	61	13	13	20	52	1.74
27516--27772	20	13.5	20	82	11	308	42	20	18	18	1.90
27516--27810	40	7.9	40	80	11	308	42	20	19	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27818--27905	20	4.4	20	91	0	131	18	17	25	39	1.91
28391--28432	21	2.2	19	87	12	59	21	35	19	23	1.96
28414--28496	42	2.0	42	83	4	105	22	38	18	20	1.93
29880--29915	14	2.6	14	90	0	54	30	0	22	47	1.52
30046--30116	33	2.1	34	92	2	117	46	18	22	12	1.82
30131--30218	33	2.6	34	83	7	108	13	23	18	44	1.85
30198--30266	20	3.5	19	78	7	75	14	18	24	42	1.88
33594--33647	20	2.7	20	100	0	108	25	18	25	29	1.98
33593--33660	20	3.4	20	91	0	100	25	19	25	30	1.98
33647--33779	20	6.7	20	92	0	230	20	20	18	40	1.92
33634--33760	40	3.2	40	76	16	138	20	19	19	40	1.92
33769--33821	21	2.5	21	93	0	88	35	16	24	22	1.95
38784--38839	25	2.2	25	93	0	94	51	12	12	23	1.73
41548--41736	41	4.6	42	77	6	163	32	16	16	34	1.91
41587--42117	41	13.0	41	86	3	669	27	19	18	34	1.95
43428--43675	43	5.8	43	85	2	295	25	24	18	31	1.98
43428--43667	129	1.9	129	84	6	326	25	24	18	31	1.97
58675--58751	23	3.8	20	80	11	68	24	32	25	16	1.96
58716--58757	19	2.3	19	83	4	50	23	28	33	14	1.94
61513--61549	19	1.9	19	94	0	65	21	32	24	21	1.98
64207--64551	191	1.8	192	83	4	464	40	11	10	37	1.76

Tables:   1

The End!