Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000207.1 Hibiscus syriacus cultivar Beakdansim tig00000368_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68613

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
428--465
12
3.2
12
88
0
58
18
13
0
68
1.21
421--465
24
1.9
24
90
4
74
20
13
0
66
1.24
425--473
12
4.2
12
84
2
55
20
14
2
63
1.40
802--879
6
12.2
6
70
15
50
16
5
3
74
1.15
1357--1470
33
3.4
34
85
4
160
44
8
19
27
1.80
2337--2374
3
13.0
3
88
5
51
31
5
0
63
1.17
2329--2375
20
2.3
20
85
0
67
34
4
0
61
1.15
3867--3896
3
10.3
3
92
7
53
33
0
0
66
0.92
3894--3944
2
25.0
2
92
4
84
50
1
0
47
1.12
4771--4847
28
2.7
26
75
13
64
32
6
0
61
1.22
4793--4847
28
2.1
25
83
12
67
34
5
0
60
1.20
4780--4850
30
2.6
27
77
8
72
32
7
0
60
1.23
15410--15491
18
4.4
18
81
14
96
79
0
9
10
0.94
15389--15486
50
2.0
49
83
15
123
78
0
12
9
0.96
15410--15486
9
9.1
9
83
13
78
79
0
9
11
0.94
15838--15875
18
2.1
18
90
0
58
34
5
5
55
1.45
15896--16149
126
2.0
126
99
0
499
40
14
12
33
1.83
16253--16317
20
3.2
20
89
8
105
30
15
24
29
1.96
21125--21166
22
1.9
22
95
0
75
11
23
40
23
1.88
21507--21582
22
3.5
22
83
7
100
35
13
14
36
1.85
22078--22132
17
3.1
17
68
27
51
47
7
25
20
1.75
21936--22269
120
2.9
107
84
10
346
38
16
18
26
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22198--22257
19
3.0
21
68
22
65
46
8
21
23
1.78
22200--22263
20
3.2
20
71
20
71
42
9
21
26
1.83
22061--22464
123
3.3
123
86
5
529
40
15
18
26
1.89
22852--22889
3
13.0
3
83
5
51
28
2
2
65
1.19
22844--22885
17
2.5
17
88
0
57
28
2
2
66
1.16
26260--26284
13
1.9
13
100
0
50
32
12
8
48
1.69
26932--26973
12
3.5
12
90
0
57
16
14
0
69
1.20
29986--30026
21
2.0
21
100
0
82
19
4
26
48
1.69
30481--30577
46
2.1
46
100
0
194
31
13
23
30
1.93
32897--32934
17
2.2
17
90
0
58
31
23
5
39
1.77
40004--40032
2
14.5
2
100
0
58
51
0
0
48
1.00
41369--41791
60
6.8
63
79
9
385
37
20
15
26
1.92
41445--41791
60
5.7
60
81
5
403
37
19
16
27
1.93
41376--41787
121
3.3
121
87
4
549
37
19
16
26
1.93
42295--42337
3
14.7
3
90
4
70
37
0
0
62
0.95
42503--42675
47
3.7
47
90
0
258
27
39
10
22
1.87
43534--43590
30
1.9
30
85
0
78
21
12
7
59
1.56
49454--49510
23
2.5
23
78
13
64
31
21
15
31
1.94
55099--55161
29
2.2
29
97
0
117
42
11
17
28
1.83
61785--61904
35
3.3
36
87
6
172
44
18
5
32
1.71
61833--61896
20
3.4
20
66
29
59
46
18
3
31
1.65
67331--67447
36
3.2
35
81
12
146
46
17
3
32
1.65

Tables:   1

The End!