Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002071.1 Hibiscus syriacus cultivar Beakdansim tig00004228_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24483

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
400--444
22
2.1
22
88
12
67
28
0
4
66
1.11
400--450
22
2.3
22
83
16
61
31
0
3
64
1.11
1317--1379
24
2.5
24
82
10
65
28
3
1
66
1.16
4569--4601
16
2.1
16
100
0
66
24
18
6
51
1.68
11810--11848
9
4.7
9
81
18
57
76
0
12
10
1.01
11813--11853
15
2.6
16
92
7
75
75
0
12
12
1.05
11810--11870
22
2.7
21
87
10
77
75
1
13
9
1.12
12506--12549
20
2.2
20
88
4
63
34
18
22
25
1.96
12882--12965
22
3.9
22
84
7
109
38
10
13
38
1.79
12876--12961
44
2.0
44
88
0
127
36
11
12
39
1.80
13331--13391
17
3.2
17
68
24
50
49
6
22
21
1.72
13563--13666
39
2.7
39
92
4
176
47
6
24
22
1.75
13447--13786
159
2.1
160
87
5
494
42
13
18
25
1.87
14157--14208
3
17.7
3
90
4
79
36
0
0
63
0.95
15567--15616
21
2.3
23
79
10
68
32
0
2
66
1.03
15575--15619
22
2.1
21
88
12
65
28
0
4
66
1.11
15575--15625
22
2.3
22
83
16
61
31
0
3
64
1.11
19281--19320
21
1.9
21
85
10
55
27
10
27
35
1.89
20482--21074
211
2.8
210
88
5
866
50
7
12
29
1.67
21083--21153
34
2.1
34
92
5
117
56
5
1
36
1.32
21126--21286
19
8.1
20
70
19
88
47
4
3
44
1.40
21129--21179
2
26.5
2
81
15
63
52
1
0
45
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21187--21235
22
2.3
20
89
6
71
48
6
6
38
1.53
21272--21327
22
2.6
22
86
10
73
50
0
5
44
1.25
21234--21327
19
4.9
20
71
16
74
45
3
4
46
1.38
21670--21743
37
2.1
36
84
5
96
40
9
10
39
1.73
21729--21772
20
2.2
20
88
4
63
45
4
9
40
1.56
21745--21781
15
2.4
15
90
4
56
51
8
2
37
1.46
21966--22041
40
1.9
39
86
7
109
46
5
3
44
1.44
22148--22205
15
3.8
15
78
13
64
44
3
1
50
1.29
22202--22262
14
4.3
14
78
12
61
45
4
3
45
1.41
22180--22293
22
5.3
21
69
21
67
45
4
2
47
1.36
22155--22243
15
5.6
15
69
23
58
46
3
1
49
1.26

Tables:   1

The End!