Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002072.1 Hibiscus syriacus cultivar Beakdansim tig00004229_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80012

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4372--4600
112
2.0
112
91
1
370
34
15
17
31
1.92
14209--14242
16
2.2
16
90
10
54
73
5
2
17
1.16
26951--27008
23
2.5
23
94
0
98
34
15
17
32
1.91
30995--31039
17
2.6
17
96
0
81
57
0
17
24
1.40
41726--41773
10
4.8
10
75
10
53
16
18
25
39
1.91
41783--41841
18
3.3
18
97
0
109
18
49
20
11
1.79
41842--41978
29
4.8
29
74
12
102
27
8
24
40
1.84
41933--42024
29
3.2
28
83
6
103
32
5
22
39
1.77
42798--43130
112
2.9
118
92
5
588
17
16
33
31
1.93
44872--44943
18
4.3
18
74
16
82
16
48
19
15
1.81
44877--44943
31
2.2
31
97
0
125
16
47
19
16
1.82
44930--44963
8
4.4
8
85
7
52
14
35
23
26
1.94
44894--44930
13
2.8
13
87
0
56
16
45
21
16
1.84
44933--44963
15
2.1
15
93
0
53
12
35
22
29
1.91
46846--46954
24
4.5
24
71
8
87
22
14
15
47
1.81
49806--49844
12
3.4
12
93
6
64
53
17
10
17
1.71
50540--50578
20
2.0
20
84
0
51
33
23
7
35
1.83
55586--55634
11
4.6
11
82
10
66
34
2
30
32
1.69
59661--59738
31
2.5
31
91
0
120
37
6
21
34
1.79
61217--61395
59
3.1
59
86
2
236
27
16
25
29
1.97
61861--61894
16
2.2
15
89
5
50
47
0
2
50
1.16
67872--68057
59
3.2
57
78
7
185
28
14
23
33
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67893--68057
58
2.8
59
80
9
185
29
13
23
33
1.93
73583--73607
11
2.3
11
100
0
50
76
0
24
0
0.80
75586--75861
134
2.1
132
81
8
319
30
13
15
40
1.87
79249--79466
112
1.9
112
94
0
382
35
19
15
29
1.93

Tables:   1

The End!