Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002076.1 Hibiscus syriacus cultivar Beakdansim tig00004240_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73235

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2317--2363
22
2.2
21
85
11
60
27
0
2
70
0.99
6789--6855
8
8.6
8
80
6
57
38
20
10
29
1.86
6777--6830
12
4.5
12
83
0
63
37
24
12
25
1.91
6770--6846
4
19.2
4
83
0
55
38
22
11
27
1.88
14753--14788
13
2.6
14
91
8
56
38
2
0
58
1.13
15887--15929
21
2.0
21
82
8
52
48
4
9
37
1.56
16078--16132
3
19.3
3
78
10
62
29
0
3
67
1.08
16079--16137
28
2.1
28
100
0
118
28
0
3
67
1.06
29250--29294
19
2.4
18
75
10
54
42
20
8
28
1.82
35140--35196
23
2.5
23
85
0
69
61
10
12
15
1.57
35363--35469
14
7.6
14
80
0
124
56
14
14
14
1.69
35363--35469
28
3.8
28
87
0
160
56
14
14
14
1.69
35359--35469
42
2.6
42
84
0
141
56
14
13
15
1.67
38577--38601
10
2.5
10
100
0
50
16
12
28
44
1.83
39802--39827
13
2.0
13
100
0
52
46
0
0
53
1.00
40922--40964
21
2.0
21
82
8
52
48
4
9
37
1.56
41113--41167
3
19.3
3
78
10
62
29
0
3
67
1.08
41114--41172
28
2.1
28
100
0
118
28
0
3
67
1.06
54229--54273
19
2.4
18
75
10
54
42
20
8
28
1.82
56480--56516
19
2.0
18
89
5
56
56
0
2
40
1.13
57130--57176
23
2.1
21
84
7
58
27
2
8
61
1.36
60077--60133
23
2.5
23
85
0
69
61
10
12
15
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60300--60406
14
7.6
14
80
0
124
56
14
14
14
1.69
60300--60406
28
3.8
28
87
0
160
56
14
14
14
1.69
60296--60406
42
2.6
42
84
0
141
56
14
13
15
1.67
63512--63536
10
2.5
10
100
0
50
16
12
28
44
1.83
72823--72857
18
1.9
18
88
0
52
48
14
0
37
1.44

Tables:   1

The End!