genome.fa.s2077.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002077.1 Hibiscus syriacus cultivar Beakdansim tig00004246_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88592

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1282--1341	22	2.8	22	80	14	72	33	13	31	21	1.92
6230--6274	23	2.0	23	95	0	81	28	20	17	33	1.95
12376--12426	14	3.6	14	89	0	84	17	15	9	56	1.65
12655--12680	10	2.6	10	100	0	52	50	19	19	11	1.77
12829--12861	8	4.1	8	88	11	50	51	0	0	48	1.00
13540--13603	27	2.2	30	81	8	80	35	3	10	50	1.54
17118--17145	12	2.3	12	100	0	56	32	0	0	67	0.91
22818--22858	18	2.3	18	87	4	57	60	2	7	29	1.36
24876--24932	24	2.4	24	96	0	105	26	3	31	38	1.73
32155--32252	20	4.8	20	77	3	88	36	23	18	21	1.95
32096--32252	41	3.9	41	70	11	126	38	25	17	18	1.93
32239--32409	20	8.6	20	84	5	107	35	26	18	20	1.95
32219--32428	60	3.5	58	80	7	208	37	25	17	20	1.94
32273--32428	20	7.8	20	87	4	174	35	25	17	21	1.95
32239--32428	40	4.8	40	86	5	208	36	25	17	20	1.94
33331--33355	12	2.1	12	100	0	50	72	0	28	0	0.86
35638--35949	19	17.4	19	84	13	439	47	17	21	14	1.83
35909--35963	14	3.6	14	76	21	56	47	20	21	10	1.80
35978--36075	19	5.4	19	84	13	143	14	23	17	44	1.85
36045--36087	19	2.3	19	83	0	50	18	20	16	44	1.87
36186--36223	14	2.7	15	88	12	62	47	18	0	34	1.49
38196--38252	14	3.7	14	77	20	60	45	22	21	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38177--38269	33	2.8	33	95	0	168	47	21	20	10	1.80
38140--38274	19	7.6	19	76	16	128	45	23	19	11	1.82
38270--38382	19	6.5	19	73	19	111	7	17	27	46	1.76
38270--38361	33	2.8	33	93	3	150	7	18	28	45	1.76
38300--38398	19	5.4	18	74	12	71	10	18	26	45	1.80
38446--38914	93	5.1	93	98	0	904	46	18	12	22	1.83
40618--40674	14	3.7	14	75	20	60	42	24	24	8	1.83
40610--40691	33	2.5	33	93	0	146	47	20	21	9	1.79
40632--40696	19	3.7	19	72	19	59	44	23	21	10	1.83
40708--40764	14	3.7	14	75	20	60	8	24	22	43	1.81
40722--40810	19	4.9	19	72	15	80	11	23	21	43	1.84
40692--40810	33	3.4	33	88	6	157	10	22	22	44	1.82
40902--40972	33	2.2	33	94	0	124	47	16	23	11	1.79
41154--41208	22	2.5	22	81	0	74	20	16	40	23	1.91
41355--41548	20	9.6	20	79	5	203	19	20	24	35	1.95
41355--41548	60	3.2	60	83	0	244	19	20	24	35	1.95
41515--41612	20	4.8	20	77	3	79	21	18	23	36	1.95
41515--41612	41	2.4	41	77	6	110	21	18	23	36	1.95
41880--41908	13	2.3	13	94	5	51	48	10	0	41	1.37
48769--48801	2	16.5	2	100	0	66	51	0	0	48	1.00
48927--48969	16	2.5	16	81	11	50	51	4	0	44	1.22
48927--48970	18	2.5	18	82	10	56	50	4	0	45	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56176--56253	31	2.5	30	79	8	86	56	1	8	33	1.39
62846--62893	7	6.7	7	85	4	51	56	0	0	43	0.99
62846--62893	14	3.4	14	82	5	60	56	0	0	43	0.99
62855--62898	15	3.0	14	80	9	52	52	2	0	45	1.13
71067--71100	17	2.0	17	94	0	59	50	14	5	29	1.67
73265--73311	17	3.1	15	77	16	53	65	0	0	34	0.93
77309--77349	15	2.7	15	96	0	73	31	7	7	53	1.56
77451--77495	20	2.2	20	96	0	81	24	28	20	26	1.99
77669--77719	22	2.3	22	89	0	75	21	41	15	21	1.90
78106--78219	58	1.9	59	96	1	212	11	17	22	48	1.79
78106--78219	20	5.8	20	88	2	151	11	17	22	48	1.79
79763--79870	42	2.6	42	92	0	162	22	17	33	26	1.96
80178--80226	20	2.5	20	82	0	53	36	22	18	22	1.95
80218--80297	33	2.4	34	89	2	117	45	20	21	13	1.85
80248--80280	14	2.4	14	94	0	57	48	21	18	12	1.80
80298--80336	19	2.0	20	85	5	53	15	15	17	51	1.77
80341--80389	20	2.5	20	89	0	80	16	18	24	40	1.90
80376--80419	20	2.2	20	91	0	70	15	9	22	52	1.71
83358--83417	24	2.5	24	83	0	84	38	18	18	25	1.93

Tables:   1

The End!