genome.fa.s2078.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002078.1 Hibiscus syriacus cultivar Beakdansim tig00004248_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64649

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10727--11020	147	2.0	147	98	0	570	32	25	18	24	1.97
16897--16945	24	2.0	24	100	0	98	44	12	16	26	1.82
19762--19792	12	2.6	12	89	0	53	41	6	6	45	1.55
25175--25247	23	3.2	23	86	0	101	39	19	5	35	1.75
25660--25729	21	3.3	21	90	6	97	37	22	5	34	1.78
25664--25734	23	3.2	23	88	8	110	38	22	5	33	1.78
26151--26223	23	3.2	23	92	0	119	38	21	5	34	1.77
24773--26569	489	3.7	489	95	0	3179	40	10	7	41	1.68
26569--26660	25	3.8	25	72	8	100	38	10	9	41	1.73
29075--30195	183	6.1	183	95	1	1955	33	16	14	35	1.90
31409--31490	36	2.3	36	95	0	146	20	32	8	37	1.83
31409--31490	12	6.8	12	87	0	110	20	32	8	37	1.83
31409--31477	6	11.5	6	82	0	75	21	33	8	36	1.84
31427--31490	18	3.6	18	75	8	67	18	32	9	39	1.83
32986--34148	200	5.8	200	96	0	2078	30	18	15	36	1.92
34261--34309	19	2.6	19	96	0	89	55	10	2	32	1.45
35876--35915	21	1.9	21	89	0	62	2	40	0	57	1.12
36101--36166	33	2.0	33	90	0	105	22	48	0	28	1.51
36200--36264	21	3.1	21	93	0	103	16	30	10	41	1.83
38480--38520	21	1.9	22	85	5	57	21	17	9	51	1.74
38659--38705	20	2.4	19	86	10	67	17	14	10	57	1.65
38444--38917	182	2.6	182	89	0	698	27	17	13	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40155--40196	21	2.0	21	86	4	59	33	2	7	57	1.39
41854--41902	24	2.0	24	84	7	64	10	14	26	48	1.75
41865--41895	14	2.2	14	100	0	62	6	12	29	51	1.65
41863--41915	24	2.2	24	86	0	70	13	11	20	54	1.69
44165--44210	24	1.9	24	95	0	83	23	21	13	41	1.88
45806--45849	10	4.1	10	81	16	52	11	9	18	61	1.55
45806--45849	23	1.9	23	95	0	79	11	9	18	61	1.55
45916--45946	16	1.9	16	100	0	62	6	12	22	58	1.58
48243--48310	31	2.2	30	84	5	100	33	26	2	36	1.72
48917--48997	30	2.7	30	90	1	126	38	27	1	33	1.65
51949--52021	20	3.7	19	78	7	74	39	27	19	13	1.89
52396--52466	33	2.2	33	94	0	124	11	23	16	47	1.79
52546--52618	21	3.5	20	81	5	92	47	17	20	13	1.81
52662--52718	14	3.7	14	75	20	60	8	24	22	43	1.81
52646--52767	33	3.5	33	86	11	156	10	23	18	46	1.80
52703--52767	21	3.1	21	82	4	96	10	26	15	47	1.78
54435--54657	93	2.4	93	99	0	437	22	13	18	44	1.85
54771--54827	14	3.7	14	72	20	51	43	24	22	8	1.81
54754--54876	33	3.7	33	91	0	183	45	27	17	8	1.79
54785--54876	19	5.4	18	72	24	65	46	28	17	7	1.75
54802--54860	14	3.9	14	76	20	64	47	28	16	6	1.72
54872--55009	19	7.6	19	80	9	137	10	19	24	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54872--55009	56	2.5	53	85	8	163	10	19	24	45	1.81
54872--55009	37	3.8	38	80	8	137	10	19	24	45	1.81
56901--56932	14	2.3	14	94	0	55	34	0	21	43	1.53
57023--57110	19	4.8	19	81	14	114	47	14	22	14	1.81
57023--57129	53	2.0	52	96	1	196	45	15	24	14	1.83
57143--57387	32	7.2	33	75	16	234	13	22	17	45	1.84
57125--57387	102	2.6	100	89	5	377	14	22	17	45	1.84
57177--57344	69	2.4	69	84	12	213	14	23	16	45	1.84
57233--57369	69	2.0	70	92	4	233	13	21	16	47	1.82
60571--60753	20	9.6	20	76	11	150	20	17	25	36	1.95
60571--60677	39	2.7	40	91	2	171	19	16	25	38	1.93
60576--60701	59	2.1	59	82	5	148	22	17	24	35	1.95
60740--60790	19	2.6	19	81	9	59	11	17	29	41	1.85

Tables:   1

The End!