Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002079.1 Hibiscus syriacus cultivar Beakdansim tig00004249_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106825

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2588--2617
13
2.4
13
94
5
53
26
30
0
43
1.55
4269--4373
36
2.9
36
92
1
176
30
35
4
29
1.78
9876--9960
11
7.2
11
72
22
66
31
35
3
29
1.75
9873--9978
36
2.9
36
91
2
169
30
35
4
29
1.78
17445--17485
14
3.0
14
89
3
57
36
0
41
21
1.54
17805--17848
20
2.1
21
87
4
63
43
9
11
36
1.72
27277--27393
3
40.0
3
88
5
168
62
0
0
36
1.01
27277--27400
23
5.4
23
88
2
169
63
0
0
35
1.00
27520--27735
68
3.2
68
90
0
351
28
24
14
32
1.94
29635--29773
64
2.2
64
79
12
153
20
19
18
41
1.90
30755--30935
91
2.0
91
90
0
281
22
27
20
29
1.99
38054--38099
23
2.0
21
84
12
56
36
17
13
32
1.88
38068--38113
24
2.0
23
82
4
56
41
15
15
28
1.87
40947--41026
35
2.2
37
91
4
128
31
37
3
27
1.74
41456--41502
14
3.1
15
75
12
51
72
6
19
2
1.17
45413--45491
35
2.2
36
88
2
115
31
35
3
29
1.75
49716--49777
27
2.2
28
78
13
74
11
17
11
59
1.60
52663--52692
13
2.4
13
94
5
53
43
0
30
26
1.55
59963--60013
24
2.1
24
85
0
66
13
13
15
56
1.67
60885--61056
90
1.9
91
89
1
265
22
26
22
29
1.99
61772--61814
2
21.5
2
100
0
86
51
0
0
48
1.00
61869--61928
24
2.5
24
89
2
95
66
10
18
5
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70927--70974
1
48.0
1
82
0
60
0
0
8
91
0.41
70912--70963
21
2.6
19
80
14
59
0
3
11
84
0.74
70927--70974
10
4.7
10
94
5
87
0
0
8
91
0.41
70927--70974
21
2.3
21
100
0
96
0
0
8
91
0.41
77664--77875
68
3.1
68
94
0
370
33
14
25
26
1.94
78006--78064
3
20.0
3
78
3
66
38
1
0
59
1.08
79205--79265
21
2.9
21
92
2
104
26
6
4
62
1.40
84281--84351
24
2.8
25
83
10
83
73
7
16
2
1.18
92117--92141
13
1.9
13
100
0
50
4
16
0
80
0.87
92116--92164
17
2.8
18
82
17
59
2
16
2
79
0.92
96310--96475
90
1.8
92
88
5
257
32
16
13
36
1.89
98586--98667
42
2.0
42
87
0
119
25
20
20
32
1.97
98161--98715
216
2.5
220
87
4
775
29
20
18
32
1.96
99364--99426
3
21.7
3
80
6
76
34
1
1
61
1.15
99350--99416
31
2.2
31
83
0
80
35
1
1
61
1.15
99836--99873
13
3.2
12
88
7
51
31
7
2
57
1.41
103970--104001
5
6.4
5
92
0
55
78
3
18
0
0.89

Tables:   1

The End!