genome.fa.s208.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000208.1 Hibiscus syriacus cultivar Beakdansim tig00000370_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114878

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5388--5515	37	3.5	37	73	8	116	26	15	15	42	1.87
5472--5896	66	6.5	66	88	2	595	31	16	12	40	1.85
5628--5746	30	3.8	30	72	18	107	33	15	12	37	1.86
5529--5782	36	7.6	36	67	24	173	30	16	14	38	1.88
5804--5991	87	2.2	87	84	0	243	29	17	12	40	1.86
5875--5917	21	2.0	21	86	0	59	34	16	9	39	1.80
5891--6072	36	5.4	35	67	20	136	28	18	14	39	1.89
5891--6068	66	2.7	66	91	0	284	28	18	14	38	1.90
5737--6040	153	2.0	154	88	0	448	30	16	12	40	1.85
6071--6631	138	4.0	139	80	2	608	28	27	16	27	1.97
6067--6611	278	2.0	278	84	1	716	28	27	16	26	1.97
9399--9432	17	2.0	18	88	11	54	41	0	0	58	0.98
9588--9628	3	13.7	3	89	0	64	60	0	39	0	0.96
9588--9628	12	3.4	12	96	0	73	60	0	39	0	0.96
16529--16571	12	3.8	12	76	17	56	2	41	9	46	1.48
20932--20975	21	2.2	20	83	4	52	52	2	2	43	1.26
20929--21293	180	2.0	183	94	1	637	40	3	9	46	1.54
28985--29057	31	2.4	31	86	4	94	53	10	8	27	1.64
32738--32966	64	3.6	62	80	8	255	33	19	19	27	1.96
33640--33703	30	2.1	30	85	0	83	18	18	28	34	1.95
37582--37810	64	3.6	62	80	8	255	33	19	19	27	1.96
38477--38539	29	2.1	30	85	2	83	19	19	26	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42381--42608	64	3.6	62	80	8	246	33	19	19	28	1.96
46836--46886	21	2.4	21	96	0	93	35	23	15	25	1.94
47273--47312	21	2.0	21	85	14	57	37	5	27	30	1.78
48300--48778	224	2.1	226	94	2	858	43	7	8	39	1.64
48847--49315	178	2.6	178	88	3	665	41	14	17	26	1.87
49236--49282	20	2.4	19	82	10	67	53	10	17	19	1.72
49245--49287	20	2.3	19	88	11	63	51	11	16	20	1.75
51489--51532	21	2.1	21	91	0	70	40	11	31	15	1.83
56062--56150	32	2.8	32	85	0	124	30	15	21	32	1.94
56688--56783	34	2.7	36	75	6	97	29	20	14	35	1.93
56689--57040	73	5.0	69	76	9	320	27	20	14	37	1.91
56908--56962	15	3.4	15	72	18	56	23	27	16	32	1.96
56874--57354	106	4.6	106	82	9	476	26	20	13	39	1.90
57055--57354	36	8.4	36	84	5	378	26	20	12	41	1.88
57055--57354	71	4.2	72	86	4	367	26	20	12	41	1.88
56924--57329	102	3.9	106	82	9	433	26	20	13	40	1.89
56688--57041	36	10.1	36	78	9	311	27	20	14	37	1.91
57407--57570	69	2.4	68	81	8	199	32	16	10	40	1.83
57656--57839	40	4.3	42	69	14	108	24	30	17	27	1.97
57758--57978	112	2.0	112	94	0	388	28	29	16	25	1.97
58291--58324	17	1.9	18	94	5	61	35	41	0	23	1.55
59058--59151	29	3.2	29	79	13	104	14	10	12	61	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62547--62588	20	2.2	19	86	4	57	73	2	21	2	1.06
63371--63458	32	2.8	32	92	0	131	28	15	23	31	1.96
64196--64281	21	4.4	21	71	16	76	25	24	12	37	1.91
64217--64339	36	3.4	36	95	1	219	26	22	13	36	1.92
64241--64546	102	2.9	104	83	6	388	26	18	14	40	1.89
64352--64593	36	6.7	36	87	1	333	24	18	13	43	1.86
64353--64602	71	3.5	71	87	1	329	24	19	13	42	1.87
64466--64563	21	5.3	19	65	29	61	25	19	11	43	1.84
64625--64714	45	2.0	46	80	6	103	25	14	14	45	1.83
64674--64834	70	2.3	67	81	10	184	34	16	11	36	1.86
64953--65097	43	3.4	43	69	14	131	26	31	16	24	1.96
64918--65097	83	2.2	83	91	0	297	25	32	16	25	1.96
64921--65233	40	7.4	42	69	12	160	25	30	17	26	1.97
65000--65247	130	1.9	130	89	0	388	25	29	17	28	1.98
64921--65198	40	6.6	41	69	14	172	24	30	18	25	1.98
66943--66968	7	3.7	7	100	0	52	57	11	0	30	1.34
71371--71406	2	18.0	2	100	0	72	50	0	0	50	1.00
72179--72274	7	11.9	8	72	19	67	79	1	17	2	0.89
72171--72237	20	3.2	21	77	8	75	76	0	19	4	0.96
72172--72272	31	3.2	31	80	16	109	78	0	17	2	0.94
72179--72267	10	8.9	10	66	17	51	79	1	16	2	0.89
72202--72279	22	3.5	22	78	13	79	79	1	16	2	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72181--72263	11	7.9	11	71	14	59	78	1	18	2	0.93
72199--72279	23	3.6	22	79	14	85	79	1	17	2	0.92
72172--72272	32	3.2	32	80	16	104	78	0	17	2	0.94
72172--72283	40	2.8	39	79	15	99	77	1	17	2	0.97
72199--72288	21	4.0	21	77	18	76	77	3	15	3	1.03
74352--74463	42	2.7	43	75	8	115	25	20	21	33	1.97
74485--74757	150	1.8	152	86	4	401	41	13	12	33	1.82
74783--74845	20	3.0	20	71	13	56	26	15	20	36	1.93
78277--78327	21	2.5	20	82	14	61	62	7	5	23	1.44
80714--80912	76	2.6	78	86	5	266	23	32	23	20	1.98
88679--88726	17	2.9	17	80	17	57	14	0	27	58	1.37
88960--89029	29	2.3	29	90	9	106	41	2	18	37	1.66
89354--89545	75	2.5	77	87	3	266	23	32	23	19	1.98
94444--94476	7	4.7	7	100	0	66	0	27	27	45	1.54
98661--98705	21	2.2	21	88	4	65	46	0	0	53	1.00
99452--99493	9	4.7	9	100	0	84	11	21	0	66	1.23
103929--103960	16	1.9	16	93	6	55	43	6	3	46	1.44
103929--103968	17	2.4	17	87	8	55	47	5	2	45	1.38
104017--104042	13	2.0	13	100	0	52	53	0	7	38	1.30
104002--104051	16	3.3	15	78	16	50	48	2	8	42	1.44
104709--104748	13	3.0	14	83	16	50	55	0	7	37	1.29
104876--104925	16	3.1	16	80	11	57	42	16	12	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109999--110119	22	5.5	22	88	2	163	27	28	25	19	1.98
109999--110121	43	2.8	44	88	1	176	27	27	25	19	1.99
110664--110822	64	2.5	64	81	11	157	25	21	20	32	1.97

Tables:   1

The End!