Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002080.1 Hibiscus syriacus cultivar Beakdansim tig00004250_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123712

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
562--614
2
28.0
2
88
11
85
49
0
0
50
1.00
9703--9838
69
2.0
69
92
0
227
27
37
2
33
1.69
11738--12052
162
1.9
162
98
0
603
40
9
6
43
1.63
13910--13938
15
1.9
15
100
0
58
72
0
0
27
0.85
15559--15675
39
3.0
39
96
1
209
33
2
15
48
1.58
17636--17877
81
3.0
81
93
1
396
41
35
4
18
1.71
41684--41715
16
2.0
16
93
0
55
43
3
6
46
1.44
45835--45872
18
2.1
18
95
0
67
26
28
28
15
1.96
46418--46466
6
8.2
6
97
0
71
32
10
16
40
1.82
50321--50378
23
2.5
23
91
2
98
37
17
15
29
1.90
52230--52267
20
1.9
20
88
0
58
21
26
10
42
1.85
53782--53902
60
2.0
60
85
0
161
33
11
14
40
1.82
54537--54578
22
2.0
22
85
4
59
47
4
0
47
1.23
54617--54666
26
2.0
25
84
11
66
44
2
0
54
1.11
54764--54807
2
22.0
2
100
0
88
50
0
0
50
1.00
57135--57446
43
7.2
42
76
11
190
24
18
25
31
1.98
57196--57403
86
2.4
86
86
1
292
22
19
25
33
1.97
57153--57396
129
1.9
129
83
5
314
24
18
25
31
1.98
57196--57446
129
1.9
129
81
0
295
23
19
25
32
1.98
60657--60733
38
2.1
38
82
7
95
48
0
3
48
1.20
63207--63248
22
2.0
22
85
4
59
47
4
0
47
1.23
65187--65229
16
2.5
18
85
7
63
30
20
18
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71751--71872
39
3.2
38
88
5
176
44
10
12
32
1.76
80931--80999
30
2.3
30
92
0
111
20
17
33
28
1.95
82522--82599
29
2.7
28
82
4
75
33
5
14
47
1.66
83033--83066
16
2.1
16
88
0
50
50
0
2
47
1.16
83106--83141
16
2.1
18
90
10
58
25
2
5
66
1.27
83639--83685
23
2.1
21
84
7
58
36
17
12
34
1.87
83612--83856
130
1.9
130
91
0
400
35
12
14
36
1.85
84257--84332
35
2.2
35
92
0
125
35
1
23
39
1.63
90873--91033
65
2.5
65
89
5
256
27
18
22
30
1.98
90873--91081
65
3.2
64
82
8
246
26
17
23
32
1.97
93755--93806
20
2.6
20
87
0
68
17
23
26
32
1.96
99723--99786
19
3.4
19
95
0
110
17
23
34
25
1.96
100612--100648
2
18.5
2
100
0
74
51
48
0
0
1.00
100648--100678
16
1.9
16
100
0
62
32
12
19
35
1.90
102234--102327
49
1.9
49
82
8
120
53
7
8
30
1.59
102862--102913
27
1.9
27
96
0
95
36
9
19
34
1.84
106063--106087
11
2.3
11
100
0
50
68
0
8
24
1.16
108015--108045
6
5.2
6
100
0
62
67
0
0
32
0.91
119900--119941
15
2.9
15
80
16
52
9
16
0
73
1.08
119910--119942
8
4.2
8
92
3
50
12
15
0
72
1.12
120012--120136
42
3.0
42
79
1
135
31
22
19
27
1.98
120128--120268
75
1.9
75
92
0
237
39
16
10
33
1.83

Tables:   1

The End!