Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002081.1 Hibiscus syriacus cultivar Beakdansim tig00004251_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60317

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2677--2732
28
1.9
29
86
13
80
33
5
0
60
1.19
3028--3093
34
2.0
33
88
8
98
43
4
0
51
1.22
4689--4763
23
3.2
23
92
1
114
16
21
24
38
1.92
4706--4906
23
8.7
23
86
2
188
20
20
23
34
1.96
7925--8003
40
2.0
40
97
0
149
25
6
22
45
1.76
13863--13907
20
2.2
20
100
0
90
22
0
28
48
1.50
13871--13918
20
2.4
20
85
0
60
20
2
27
50
1.60
16249--16276
2
14.0
2
100
0
56
0
50
0
50
1.00
20473--20520
23
2.1
23
100
0
96
4
29
37
29
1.76
28871--28908
7
5.4
7
90
0
58
44
34
0
21
1.52
28859--28908
21
2.4
21
80
3
57
48
34
0
18
1.48
31657--31705
18
2.7
18
87
0
71
32
34
12
20
1.90
33064--33088
12
2.1
12
100
0
50
52
0
0
48
1.00
32972--33081
45
2.5
44
84
8
143
54
8
2
34
1.44
34708--34904
95
2.1
96
96
0
360
31
16
23
28
1.96
34964--35013
18
2.6
19
84
6
66
28
16
28
28
1.97
35081--35137
20
2.8
20
76
10
62
31
14
28
26
1.94
37033--37075
14
3.1
14
89
0
59
13
11
16
58
1.64
37431--37462
16
2.0
16
93
0
55
9
12
21
56
1.64
37577--37647
31
2.2
32
95
2
126
30
25
8
35
1.86
39618--39717
49
2.0
49
96
0
182
36
8
28
28
1.85
46760--46796
19
1.9
19
94
0
65
32
29
16
21
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46880--46917
20
1.9
20
88
0
58
34
23
21
21
1.97
46884--46932
20
2.5
20
93
0
80
26
28
22
22
1.99
47752--47804
24
2.2
24
93
0
88
20
18
20
39
1.92
50120--50189
21
3.3
21
74
4
70
21
18
34
25
1.96
50723--50761
20
2.0
20
100
0
78
48
20
10
20
1.78
50826--50897
19
3.7
19
84
1
81
11
16
22
50
1.77
50904--50969
19
3.4
19
85
8
71
18
16
24
40
1.90
50903--50969
20
3.4
20
83
4
82
17
16
25
40
1.90
52867--52966
20
5.1
20
83
2
94
44
21
18
17
1.87
52873--52992
59
2.0
60
88
1
179
40
22
18
19
1.92
53466--53570
20
5.2
20
71
11
88
25
18
24
31
1.97
53466--53566
40
2.5
41
83
4
125
25
17
23
32
1.97
53585--53630
19
2.4
19
85
3
56
21
17
30
30
1.96
53596--53632
19
1.9
19
94
0
65
21
16
29
32
1.95
58924--58948
13
1.9
13
100
0
50
56
0
4
40
1.18

Tables:   1

The End!