genome.fa.s2082.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002082.1 Hibiscus syriacus cultivar Beakdansim tig00004252_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  172605

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1271--1327	19	3.0	19	97	0	105	15	22	36	24	1.94
2543--2576	17	1.9	18	88	5	52	17	0	38	44	1.49
3729--3821	46	2.0	47	85	6	127	55	5	8	30	1.52
4350--4401	27	1.9	27	96	0	95	36	9	19	34	1.84
7540--7564	11	2.3	11	100	0	50	68	0	8	24	1.16
9498--9528	6	5.2	6	100	0	62	67	0	0	32	0.91
21417--21479	15	4.2	14	76	13	54	9	14	0	76	1.02
21417--21479	16	4.1	16	75	22	64	9	14	0	76	1.02
21548--21673	43	3.0	42	79	3	137	31	22	19	26	1.97
21665--21805	75	1.9	75	92	0	237	39	16	10	33	1.83
33481--36188	282	9.8	281	82	6	3083	33	17	22	26	1.96
33233--36188	543	5.4	542	87	2	4031	33	17	22	26	1.96
34038--36188	825	2.6	835	81	6	2689	33	17	22	26	1.96
36075--36285	111	1.9	111	81	3	255	37	17	21	23	1.94
37459--37486	14	2.0	14	100	0	56	21	14	28	35	1.92
37634--38033	157	2.5	156	86	3	527	28	18	7	46	1.76
39317--39354	19	2.0	19	100	0	76	31	5	15	47	1.68
41456--41523	21	3.2	21	89	4	102	41	11	17	29	1.85
41505--41554	20	2.5	21	83	9	68	34	14	24	28	1.93
41454--41555	42	2.5	42	76	12	106	40	12	19	27	1.88
42050--42120	19	3.9	18	70	14	56	50	1	2	45	1.25
44251--44287	2	19.0	2	94	5	67	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44292--44357	25	2.6	25	80	4	78	42	3	3	51	1.32
44287--44380	27	3.6	27	78	5	93	40	4	2	53	1.32
44514--44588	31	2.4	31	93	0	123	48	13	9	29	1.73
44945--45002	24	2.4	24	73	0	62	43	6	10	39	1.66
52669--52713	23	2.0	23	86	0	63	26	26	26	20	1.99
52681--52996	150	2.1	149	90	1	499	34	21	17	26	1.95
53451--53607	64	2.4	63	80	10	158	28	18	20	33	1.96
59710--59754	23	2.0	23	81	0	54	28	26	24	20	1.99
60494--60650	64	2.4	63	79	10	149	28	18	19	33	1.96
62547--63037	248	2.0	248	95	0	876	35	20	13	30	1.92
73272--73304	14	2.4	14	100	0	66	33	15	0	51	1.43
73321--73360	21	1.9	21	94	0	71	37	17	10	35	1.83
79463--79510	22	2.2	22	88	0	69	54	22	10	12	1.68
79463--79510	11	4.4	11	81	0	51	54	22	10	12	1.68
79512--79562	24	2.2	24	92	3	86	43	21	15	19	1.88
81766--81806	2	20.5	2	89	0	64	48	4	0	46	1.23
82201--82266	29	2.2	30	89	2	98	31	28	19	19	1.97
83256--83307	25	2.1	25	85	7	70	28	19	19	32	1.96
83249--83285	17	2.3	16	90	9	58	29	18	18	32	1.96
84366--84410	10	4.6	10	80	5	56	13	20	40	26	1.89
84915--84953	16	2.4	16	91	0	60	23	12	17	46	1.83
84743--85020	112	2.5	112	96	1	502	28	11	15	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90072--90130	29	2.0	29	86	0	82	47	13	3	35	1.60
91798--91842	22	2.1	22	83	4	56	33	6	0	60	1.23
93460--93484	2	12.5	2	100	0	50	52	0	0	48	1.00
93474--93538	27	2.4	26	73	12	60	53	4	3	38	1.37
95515--95545	16	1.9	16	100	0	62	51	19	9	19	1.74
97239--97282	17	2.6	17	77	0	52	59	0	0	40	0.98
99308--99372	17	3.6	17	75	17	51	66	4	1	27	1.20
99352--99377	12	2.2	12	100	0	52	73	0	0	26	0.84
102259--102326	23	3.0	23	80	0	82	19	22	26	32	1.97
102678--102723	2	22.5	2	95	4	83	47	0	2	50	1.13
105055--105194	46	3.0	46	77	10	135	43	4	25	26	1.73
105196--105291	26	3.7	26	85	2	140	44	5	31	18	1.72
105554--105738	101	1.8	101	82	4	239	28	5	27	37	1.80
106144--106366	55	4.5	47	68	18	109	45	3	6	44	1.46
106225--106510	2	141.0	2	65	19	103	50	3	3	43	1.36
106258--106498	83	2.9	84	80	9	246	49	3	4	42	1.39
106424--106753	7	47.6	7	64	23	71	50	5	5	39	1.47
106361--106544	62	3.0	62	87	4	253	52	3	4	40	1.38
106225--106535	145	2.2	138	81	9	351	50	3	4	42	1.39
106234--106544	20	15.4	20	69	15	83	50	3	4	41	1.39
106225--106535	21	14.3	22	69	16	116	50	3	4	42	1.39
106558--106628	22	3.2	22	80	4	63	52	4	7	36	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106589--106717	36	3.6	36	87	5	163	52	6	5	35	1.49
106656--106711	29	1.9	29	82	13	71	55	5	1	37	1.33
106654--106708	22	2.6	22	86	11	71	54	5	1	38	1.34
106671--106736	29	2.3	28	80	10	71	46	4	3	45	1.38
106705--106760	22	2.4	22	82	11	58	46	3	1	48	1.30
107643--107730	31	2.8	31	82	0	113	34	18	17	30	1.93
111291--111479	99	1.9	99	82	6	240	45	7	8	38	1.64
111420--111485	27	2.6	25	76	9	78	57	7	1	33	1.36
111538--111563	9	2.9	9	100	0	52	34	19	23	23	1.96
111653--111691	13	2.9	13	85	7	51	56	10	0	33	1.33
120948--120974	14	1.9	14	100	0	54	55	0	37	7	1.28
121147--121181	17	1.9	19	88	11	56	31	8	34	25	1.86
128345--128390	21	2.1	22	84	4	58	28	32	21	17	1.96
128441--128483	22	2.0	22	86	9	61	53	16	0	30	1.43
143699--143733	17	1.9	19	88	11	56	22	0	8	68	1.16
143938--143984	13	3.7	13	80	5	60	44	2	0	53	1.12
146020--146062	19	2.3	19	79	0	50	46	4	4	44	1.45
146159--146195	20	1.9	18	89	10	56	37	5	2	54	1.38
160031--160071	21	2.0	21	90	0	64	43	0	53	2	1.13
160028--160072	12	3.8	12	84	0	54	44	0	53	2	1.13
161050--161264	106	2.0	106	100	0	430	24	11	22	41	1.86
166286--166330	18	2.5	18	85	0	63	35	13	28	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168602--168645	15	3.1	13	81	18	52	15	2	4	77	1.04
172131--172194	30	2.2	30	88	2	94	32	7	12	46	1.70

Tables:   1

The End!