Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002083.1 Hibiscus syriacus cultivar Beakdansim tig00004255_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100110

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
455--492
16
2.3
17
86
4
60
36
0
0
63
0.95
10192--10248
30
2.0
30
83
13
75
28
19
3
49
1.65
20580--20619
14
2.9
14
84
0
53
55
0
37
7
1.29
25715--25755
21
2.0
21
90
0
64
26
17
19
36
1.94
27320--27376
23
2.5
23
88
0
78
19
21
28
31
1.97
29772--29842
20
3.5
20
84
0
88
30
16
16
35
1.92
32217--32309
49
1.9
48
91
6
152
58
1
4
36
1.25
32216--32305
28
3.5
27
69
26
86
57
1
4
36
1.26
33534--33578
21
2.1
21
100
0
90
33
0
35
31
1.58
36980--37060
21
3.8
21
73
15
67
18
24
32
24
1.97
37025--37062
20
1.9
20
94
0
67
15
26
31
26
1.96
37846--37950
37
2.8
37
85
0
138
40
15
14
29
1.86
38404--38479
26
3.0
26
76
7
66
30
6
0
63
1.20
38490--38597
29
3.8
29
73
17
84
27
5
1
64
1.26
38628--38681
20
2.6
21
82
8
58
33
1
0
64
1.04
38622--38690
17
4.0
17
73
23
56
30
2
0
66
1.06
41442--41471
15
2.0
15
93
0
51
33
26
16
23
1.96
43129--43176
13
3.4
14
81
18
55
81
6
12
0
0.87
43121--43175
18
3.0
18
76
10
58
80
9
10
0
0.92
43125--43176
16
3.5
15
78
21
65
80
7
11
0
0.89
44785--45955
106
11.0
106
91
0
1759
34
24
17
22
1.96
46705--46809
37
2.8
37
86
0
147
40
15
11
33
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47394--47449
29
1.9
29
82
7
69
23
7
3
66
1.33
47514--47578
19
3.3
19
78
16
53
29
3
0
67
1.05
47521--47563
13
3.6
12
81
9
52
30
2
0
67
1.03
54248--54287
2
20.0
2
100
0
80
0
0
50
50
1.00
55238--55295
23
2.5
23
88
0
98
17
27
27
27
1.97
56224--56358
67
2.0
69
91
2
220
24
11
11
53
1.68
75656--75685
4
7.5
4
100
0
60
0
23
0
76
0.78
76267--76334
31
2.2
31
89
0
100
33
8
27
29
1.87
77969--78063
42
2.3
42
92
3
156
37
7
13
41
1.73
80553--80631
21
3.8
21
74
3
79
29
34
16
20
1.94
83229--83283
27
2.0
27
92
0
92
40
18
1
40
1.61
87213--87267
26
2.2
25
81
12
67
16
1
20
61
1.43
87251--87343
45
2.1
44
89
2
141
27
2
20
49
1.60

Tables:   1

The End!