genome.fa.s2085.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002085.1 Hibiscus syriacus cultivar Beakdansim tig00004257_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92238

Tables:   1   

This is table  1  of  1  ( 104 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434--549	35	3.3	35	85	3	144	42	18	5	33	1.73
453--576	35	3.6	36	85	9	134	41	18	6	33	1.76
3787--3885	46	2.2	46	81	7	112	37	22	23	17	1.94
3745--3885	23	6.1	23	72	9	83	35	22	24	17	1.95
6135--6242	32	3.4	32	77	8	96	35	16	16	31	1.92
9665--9696	12	2.7	12	95	0	55	34	12	43	9	1.75
9748--9833	4	23.5	4	67	17	53	48	0	0	51	1.00
9748--9833	6	15.7	6	76	18	53	48	0	0	51	1.00
9748--9838	42	2.3	40	85	14	127	49	0	0	50	1.00
9748--9854	42	2.8	40	79	15	113	47	0	0	52	1.00
13130--13202	7	10.9	7	71	22	50	35	2	1	60	1.20
13128--13200	26	2.8	26	76	12	78	35	2	1	60	1.20
13141--13203	16	3.3	19	68	20	51	34	3	0	61	1.12
13128--13209	13	6.4	13	75	9	62	35	3	1	59	1.23
14950--14988	2	19.5	2	100	0	78	51	0	0	48	1.00
16707--16741	18	1.9	18	100	0	70	25	34	22	17	1.96
18663--18708	20	2.2	21	88	3	67	17	13	10	58	1.62
21689--21741	25	2.1	26	82	10	65	58	0	5	35	1.22
22003--22074	22	3.4	22	73	11	87	18	19	25	37	1.94
22024--22089	19	3.3	19	72	12	69	18	19	21	40	1.91
21983--22096	41	2.8	41	93	4	185	17	19	22	40	1.91
22843--23047	20	10.1	20	69	4	122	38	22	20	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22885--23079	21	9.5	21	66	6	121	35	25	18	19	1.95
22863--23084	41	5.4	41	91	0	354	36	24	20	18	1.94
23445--23484	6	6.7	6	97	0	53	0	17	57	25	1.40
23445--23484	12	3.3	12	92	0	62	0	17	57	25	1.40
23583--23654	22	3.4	22	71	11	78	38	23	19	18	1.93
23561--23654	41	2.3	41	96	0	170	40	22	18	19	1.91
23568--23633	19	3.3	19	68	12	60	42	19	19	18	1.90
23646--23783	20	6.8	20	75	3	141	39	23	22	14	1.91
23688--23759	21	3.5	21	73	3	83	33	27	20	18	1.96
23666--23779	41	2.8	41	97	0	210	38	24	21	14	1.92
22362--23787	754	1.9	749	93	2	2291	30	18	21	29	1.97
24476--24575	39	2.6	39	84	6	105	29	15	17	39	1.89
31955--31993	6	6.5	6	100	0	78	48	0	0	51	1.00
35123--35161	19	2.1	19	85	9	53	53	12	0	33	1.39
39074--39136	30	2.1	30	85	5	83	22	14	14	49	1.79
39642--39696	2	27.5	2	100	0	110	49	0	0	50	1.00
39738--39812	37	2.0	37	82	5	89	49	4	1	45	1.29
40370--40526	20	7.8	20	73	6	93	38	25	17	19	1.93
40370--40526	41	3.9	41	70	11	126	38	25	17	19	1.93
40513--40686	20	8.6	20	79	5	118	34	25	20	20	1.96
40493--40687	40	4.9	39	80	3	183	35	24	20	19	1.95
40493--40686	60	3.2	60	83	0	244	35	24	20	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41069--41139	33	2.2	33	94	0	124	11	23	16	47	1.79
41219--41293	20	3.8	20	80	5	89	42	20	24	13	1.87
41277--41333	14	3.7	14	75	20	60	43	22	24	8	1.81
41231--41349	33	3.4	33	88	6	157	44	22	22	10	1.82
41231--41319	19	4.9	19	73	15	80	43	21	23	11	1.84
41367--41423	14	3.7	14	75	20	60	8	24	24	42	1.83
41350--41431	33	2.5	33	93	0	146	9	21	20	47	1.79
41345--41409	19	3.7	18	72	19	57	10	21	23	44	1.83
43129--43419	93	3.1	93	99	0	573	22	12	18	46	1.82
44933--44957	12	2.1	12	100	0	50	0	28	0	72	0.86
45131--45177	24	2.0	24	87	8	69	38	21	14	25	1.92
45858--46067	20	10.5	20	85	2	215	20	17	25	37	1.94
46034--46131	20	4.8	20	77	3	79	21	18	23	36	1.95
46034--46190	41	3.9	41	70	14	110	18	17	25	38	1.93
48864--48952	18	4.8	18	69	21	67	57	0	1	41	1.06
49184--49315	41	3.2	41	66	19	119	23	28	31	16	1.96
49270--49435	55	3.0	55	99	0	323	28	21	34	15	1.94
49380--49509	41	3.1	41	65	20	115	23	26	32	16	1.96
49523--49602	29	2.8	29	98	1	153	16	31	30	22	1.96
49618--49669	23	2.3	23	100	0	104	25	44	7	23	1.79
49780--49831	25	2.1	25	92	0	86	28	9	32	28	1.89
49893--49950	4	14.0	4	75	7	53	63	0	34	1	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49892--49923	17	1.9	16	93	6	55	62	0	37	0	0.95
49893--49950	25	2.3	25	96	0	107	63	0	34	1	1.04
50155--50245	44	2.0	46	87	8	134	40	0	12	47	1.41
51646--51704	26	2.3	24	78	16	64	40	3	8	47	1.51
52508--52570	28	2.2	30	91	5	103	57	11	0	31	1.34
52512--52577	28	2.4	28	85	10	98	56	10	0	33	1.34
52547--52595	21	2.3	21	85	3	71	53	16	0	30	1.43
52944--52976	16	2.1	16	100	0	66	27	24	18	30	1.98
53094--53151	25	2.3	25	79	5	64	24	43	15	17	1.87
53130--53172	20	2.4	18	82	17	54	16	55	6	20	1.64
53138--53178	20	2.0	20	100	0	82	14	60	4	19	1.51
53217--53300	29	2.9	29	98	0	159	16	30	32	20	1.95
53584--53715	41	3.2	41	66	19	119	23	28	31	16	1.96
53670--53835	55	3.0	55	99	0	323	28	21	34	15	1.94
53780--53909	41	3.1	41	65	20	115	23	26	32	16	1.96
53923--54032	29	3.8	29	100	0	220	16	30	29	23	1.96
54048--54099	23	2.3	23	100	0	104	25	44	7	23	1.79
54210--54261	25	2.1	25	92	0	86	28	9	32	28	1.89
54323--54380	4	14.0	4	75	7	53	63	0	34	1	1.04
54322--54353	17	1.9	16	93	6	55	62	0	37	0	0.95
54323--54380	25	2.3	25	96	0	107	63	0	34	1	1.04
54545--54648	41	2.6	40	77	11	108	42	0	11	46	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54543--54669	43	3.1	43	74	18	110	40	0	12	46	1.42
56066--56124	26	2.3	24	78	16	64	40	3	8	47	1.51
56930--56992	28	2.2	30	91	5	103	57	11	0	31	1.34
56934--56999	28	2.4	28	85	10	98	56	10	0	33	1.34
56969--57017	21	2.3	21	85	3	71	53	16	0	30	1.43
57368--57400	16	2.1	16	100	0	66	27	24	18	30	1.98
57518--57575	25	2.3	25	79	5	64	24	43	15	17	1.87
57554--57596	20	2.4	18	82	17	54	16	55	6	20	1.64
57562--57602	20	2.0	20	100	0	82	14	60	4	19	1.51
57641--57724	29	2.9	29	98	0	159	16	30	32	20	1.95
67974--68043	35	2.0	35	97	0	131	28	35	5	30	1.80
77809--77858	7	7.1	7	100	0	100	0	28	28	44	1.55
81257--81287	15	2.0	16	93	6	55	51	25	9	12	1.70
81847--81899	2	26.0	2	96	3	97	49	1	0	49	1.12
82169--82295	65	1.9	65	83	3	164	37	18	2	42	1.63
84936--85065	64	2.0	65	89	4	201	43	3	17	35	1.68

Tables:   1

The End!