genome.fa.s2087.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002087.1 Hibiscus syriacus cultivar Beakdansim tig00004259_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78744

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2648--2705	30	1.9	31	92	3	100	32	0	3	63	1.11
3698--3740	16	2.7	16	88	0	68	46	11	11	30	1.76
4257--4340	27	3.1	27	98	0	159	25	8	36	29	1.85
24061--24112	24	2.2	23	82	6	59	46	0	1	51	1.12
24084--24123	21	1.9	21	84	0	53	52	0	2	45	1.14
24719--24817	41	2.5	40	88	3	153	26	20	17	36	1.94
27670--27771	39	2.7	39	80	3	109	36	13	0	49	1.49
27674--27790	38	3.1	38	80	2	117	38	13	0	47	1.49
29073--29110	2	18.5	2	94	5	67	50	0	2	47	1.15
29984--30054	31	2.3	31	85	0	97	43	12	9	33	1.76
30650--30708	31	1.9	31	89	6	93	33	13	16	35	1.88
32442--32614	92	1.9	92	89	2	267	26	20	17	35	1.95
32774--32838	34	1.9	34	84	6	87	47	4	4	43	1.44
32792--32927	65	2.1	65	78	8	145	47	2	3	45	1.35
32813--32934	65	1.9	64	84	5	165	46	2	3	47	1.32
39051--39095	19	2.4	19	96	0	81	40	4	22	33	1.74
40222--40246	6	4.2	6	100	0	50	32	20	32	16	1.94
41017--41042	10	2.6	10	100	0	52	50	11	0	38	1.39
48064--48161	30	3.2	30	67	8	81	40	4	23	31	1.73
48076--48175	31	3.3	31	67	13	89	41	5	24	30	1.76
48057--48213	61	2.6	60	91	5	253	42	3	21	31	1.71
58888--58938	9	6.2	8	76	19	52	13	0	27	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58890--58933	17	2.6	17	85	7	63	13	0	29	56	1.38
65055--65110	17	3.2	18	80	7	62	30	0	60	8	1.27
65055--65104	24	2.1	24	96	0	91	28	0	64	8	1.22
65650--65710	23	2.7	23	89	0	95	32	11	22	32	1.90
66222--66298	37	2.1	37	82	4	93	44	3	3	48	1.39
67405--67493	45	2.0	44	93	6	153	47	8	14	29	1.75
71104--71241	73	1.9	72	87	1	204	42	7	11	38	1.69
76533--76577	23	2.0	23	82	8	56	62	2	4	31	1.27
77063--77119	5	10.4	5	78	14	51	68	1	0	29	1.00
77065--77144	29	2.8	29	94	3	137	68	2	0	28	1.02
77073--77160	37	2.5	34	77	15	90	68	3	0	28	1.06

Tables:   1

The End!