genome.fa.s2088.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002088.1 Hibiscus syriacus cultivar Beakdansim tig00004260_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75954

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14395--14434	20	2.0	20	100	0	80	20	20	15	45	1.86
14397--14443	20	2.3	20	92	0	76	17	21	19	42	1.89
14919--14987	33	2.1	33	86	5	95	33	1	34	30	1.67
14958--15070	36	3.2	36	89	1	156	28	4	34	32	1.77
18937--18982	23	2.1	21	84	8	56	0	13	6	80	0.89
19320--19388	33	2.1	33	86	5	95	33	1	34	30	1.67
19388--19441	11	4.6	12	73	26	53	29	1	35	33	1.69
19359--19471	36	3.2	36	87	1	147	29	2	34	33	1.72
19374--19438	13	5.4	12	76	21	57	30	1	33	33	1.67
25115--25227	36	3.2	36	87	1	138	32	35	3	28	1.74
25198--25266	33	2.1	33	86	5	95	30	34	1	33	1.67
25615--25653	20	2.0	20	85	10	53	82	5	12	0	0.83
29530--29642	36	3.2	36	88	3	158	32	35	3	28	1.74
29578--29681	33	3.1	33	82	9	95	30	35	1	31	1.69
33490--33524	18	1.9	18	88	0	52	45	0	22	31	1.53
36436--36520	11	7.2	11	72	22	66	31	36	2	29	1.70
36433--36537	36	2.9	36	92	1	176	30	36	3	29	1.75
36987--37033	14	3.1	15	75	12	51	72	6	19	2	1.17
40409--40493	11	7.2	11	72	22	66	31	36	3	28	1.74
40406--40510	36	2.9	36	95	1	185	30	36	4	28	1.78
44698--44879	90	2.0	91	88	1	267	28	23	27	20	1.99
55939--55987	20	2.5	20	100	0	98	42	0	36	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57116--57175	30	2.0	31	83	3	77	26	8	10	55	1.61
63933--63983	20	2.6	20	90	3	77	35	15	5	43	1.71
64685--64743	8	6.9	8	76	19	57	74	3	20	1	1.05
64685--64750	27	2.5	26	75	20	75	75	3	19	1	1.01
67114--67173	30	2.0	31	83	3	77	26	8	10	55	1.61
68078--68128	20	2.6	20	90	3	77	35	15	5	43	1.71
75452--75561	36	3.1	36	90	2	168	31	34	4	29	1.78

Tables:   1

The End!