genome.fa.s2089.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002089.1 Hibiscus syriacus cultivar Beakdansim tig00004262_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110938

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485--530	20	2.3	20	80	0	65	43	6	13	36	1.69
2286--2344	29	2.0	29	96	0	109	50	13	11	23	1.74
6918--6974	29	2.0	27	90	6	87	49	12	14	24	1.77
9119--9185	31	2.2	31	97	0	125	50	14	16	17	1.78
10935--10978	3	14.7	3	85	0	52	38	0	0	61	0.96
11032--11075	20	2.2	20	88	4	63	43	47	2	6	1.42
12324--12476	59	2.6	59	82	7	202	20	9	10	59	1.58
12324--12502	30	6.1	30	77	10	154	20	11	10	58	1.62
12464--12520	29	2.0	29	92	0	96	15	15	14	54	1.72
12470--12531	29	2.1	29	81	0	70	19	17	12	50	1.78
12474--12538	29	2.2	28	78	7	67	16	18	15	49	1.80
17265--17438	60	2.9	59	74	12	156	32	20	5	41	1.76
19049--19092	23	2.0	22	86	4	61	43	2	0	54	1.12
25261--25301	20	2.0	20	90	0	64	53	17	7	21	1.67
30391--30718	42	7.7	43	76	6	287	25	22	19	32	1.97
30391--30649	85	3.0	84	84	3	306	23	22	20	33	1.97
30448--30667	43	5.2	42	80	6	151	27	22	18	31	1.97
33197--33240	15	2.8	16	83	13	56	36	4	4	54	1.41
44267--44332	10	6.4	10	75	13	62	81	0	13	4	0.83
44281--44324	16	2.9	15	76	6	52	79	0	15	4	0.89
44267--44340	35	2.2	32	85	7	94	81	0	14	4	0.84
44267--44340	17	4.3	17	81	10	87	81	0	14	4	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44261--44325	24	2.6	26	70	18	66	80	0	15	4	0.88
45448--45619	91	1.9	91	90	2	274	41	15	19	24	1.89
45209--45952	331	2.2	331	87	3	1059	38	16	20	25	1.92
45799--45862	20	3.2	20	63	10	51	43	14	21	20	1.87
46116--46161	3	15.7	3	90	4	76	36	0	0	63	0.95
46732--46764	15	2.3	15	89	5	50	69	15	15	0	1.19
48595--48639	16	2.8	16	86	3	54	31	4	6	57	1.44
49743--49877	41	3.3	41	69	9	114	35	20	14	29	1.92
49644--50047	82	4.9	83	82	4	401	33	17	17	30	1.93
49694--50015	163	2.0	164	82	6	393	33	17	17	31	1.93
50219--50316	20	4.7	20	66	20	65	59	1	3	36	1.20
50352--50422	22	3.1	21	80	11	70	42	1	7	49	1.38
50512--50561	25	2.0	26	88	11	77	36	12	12	40	1.79
51973--52024	19	2.8	19	78	18	56	23	0	19	57	1.40
52422--52494	23	3.3	23	81	12	82	10	17	16	54	1.70
53612--53660	3	16.7	3	95	4	91	69	0	0	30	0.89
56639--56708	26	2.7	26	97	0	131	14	50	17	18	1.79
57005--57029	13	1.9	13	100	0	50	88	0	0	12	0.53
68392--68441	25	2.1	24	85	7	66	34	12	18	36	1.87
69474--69504	15	2.0	16	93	6	55	58	0	3	38	1.15
74167--74193	2	13.5	2	100	0	54	48	0	0	51	1.00
75118--75202	23	3.6	23	79	7	91	25	9	16	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75118--75212	46	2.0	47	86	6	131	25	9	17	47	1.78
78680--78760	40	2.1	38	86	9	110	33	23	18	24	1.97
78757--78790	17	2.0	17	88	0	50	26	29	11	32	1.92
83293--83366	32	2.3	32	97	0	139	40	10	12	36	1.78
89834--89889	21	2.6	21	78	13	60	37	0	1	60	1.07
89841--89871	16	1.9	16	93	0	53	45	0	0	54	0.99
96665--96740	36	2.1	35	97	2	143	36	0	18	44	1.50
104174--104202	2	14.5	2	100	0	58	48	0	0	51	1.00
104925--105587	185	3.5	183	80	5	661	39	11	15	32	1.84
104925--105587	186	3.5	183	81	6	663	39	11	15	32	1.84

Tables:   1

The End!