Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000209.1 Hibiscus syriacus cultivar Beakdansim tig00000372_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54979

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
177--210
13
2.5
14
90
4
52
76
2
17
2
1.04
1884--1922
18
2.2
17
86
4
51
23
2
7
66
1.30
2277--2310
10
3.4
10
100
0
68
20
50
17
11
1.77
2472--2499
2
14.0
2
100
0
56
50
0
0
50
1.00
20485--20529
2
22.5
2
100
0
90
48
0
0
51
1.00
22697--22748
23
2.2
25
86
6
72
25
7
1
65
1.30
23236--23291
25
2.2
25
79
17
62
28
3
16
51
1.60
26189--26216
2
14.0
2
100
0
56
50
0
0
50
1.00
26214--26238
4
6.2
4
100
0
50
24
0
0
76
0.80
26224--26276
23
2.3
24
83
9
74
16
7
0
75
1.02
26224--26291
23
3.0
23
81
10
70
14
8
0
76
1.01
26337--26406
33
2.2
33
78
16
78
15
5
7
71
1.27
36634--36687
14
3.8
14
85
7
65
79
5
14
0
0.90
36638--36686
22
2.2
21
85
7
62
81
4
14
0
0.83
36723--36779
9
6.7
9
75
15
50
77
1
21
0
0.86
36724--36784
8
7.0
8
75
14
50
77
1
19
1
0.95
37791--37998
111
1.9
111
90
4
339
35
23
17
23
1.95
46262--46315
20
2.6
21
88
2
74
27
18
22
31
1.97
47216--47261
19
2.4
19
96
0
83
50
2
36
10
1.50
53860--53948
29
3.0
28
84
12
101
25
15
21
37
1.93

Tables:   1

The End!