genome.fa.s2090.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002090.1 Hibiscus syriacus cultivar Beakdansim tig00004263_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82935

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6620--6646	4	6.8	4	100	0	54	51	0	0	48	1.00
12497--12532	6	5.8	6	90	3	54	47	16	0	36	1.47
16253--16344	45	2.0	45	97	0	175	45	14	17	22	1.84
19396--19477	26	3.2	26	94	0	137	23	21	30	24	1.99
23493--23544	20	2.6	20	100	0	104	26	13	15	44	1.84
23575--23645	21	3.5	19	75	17	72	26	21	9	42	1.84
28086--28117	2	16.0	2	100	0	64	50	0	50	0	1.00
28218--28287	2	35.0	2	100	0	140	50	0	0	50	1.00
31187--31267	38	2.1	38	97	0	153	27	17	9	45	1.79
35146--35239	40	2.4	39	74	3	98	35	23	20	21	1.96
35105--35220	20	5.8	20	67	9	65	34	26	18	20	1.96
35207--35256	19	2.6	19	87	9	66	44	26	18	12	1.84
35207--35455	20	12.5	20	81	7	229	37	24	17	20	1.94
36134--36180	24	2.0	24	87	8	69	25	14	21	38	1.92
38709--38806	19	5.4	19	84	13	143	14	22	17	45	1.84
38690--38806	53	2.2	53	98	1	227	13	23	17	44	1.85
38913--38949	14	2.6	14	91	0	65	45	21	0	32	1.52
40419--40459	21	2.0	21	85	0	55	24	14	34	26	1.94
40924--40980	14	3.7	14	77	20	60	45	22	21	10	1.82
40905--40997	33	2.8	33	95	0	168	47	21	20	10	1.80
40868--41002	19	7.6	19	76	16	128	45	23	19	11	1.82
40998--41088	33	2.8	33	91	5	141	7	18	28	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40998--41125	19	7.3	19	74	18	116	8	17	28	45	1.78
41169--41546	92	4.1	93	97	1	717	45	19	12	22	1.84
42241--42292	20	2.6	20	96	0	95	38	26	13	21	1.90
42348--42716	20	18.5	20	83	5	424	35	26	18	20	1.95
43394--43440	24	2.0	24	87	8	69	25	14	21	38	1.92
45899--46163	19	15.4	19	77	20	273	46	18	20	13	1.83
45899--46185	33	8.5	34	80	13	221	46	18	20	14	1.84
45927--46185	52	5.0	52	78	15	272	46	17	21	14	1.84
46192--46292	19	5.6	19	84	13	142	14	23	17	43	1.87
46397--46434	14	2.6	15	87	4	60	44	21	0	34	1.52
47829--47891	21	3.0	21	70	9	65	20	19	36	23	1.95
48404--48460	14	3.7	14	77	20	60	45	22	21	10	1.82
48385--48476	33	2.8	33	93	1	159	46	21	20	10	1.81
48348--48481	19	7.6	19	77	16	119	45	23	19	11	1.82
48477--48605	19	7.3	19	75	17	125	8	17	28	45	1.77
48477--48568	33	2.8	33	93	3	150	7	18	28	45	1.76
48637--49102	93	5.0	93	98	0	891	46	19	12	22	1.83
48637--49102	185	2.5	186	97	0	891	46	19	12	22	1.83
50807--50897	14	5.7	14	72	25	74	41	21	26	9	1.84
50855--50919	19	3.7	19	74	19	77	44	21	23	10	1.83
50799--50914	33	3.5	33	89	2	187	44	19	25	10	1.82
50938--51015	41	1.9	41	97	0	147	12	25	16	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50939--51014	21	3.7	21	83	3	109	11	25	17	46	1.82
51094--51164	33	2.2	33	92	0	115	47	18	22	11	1.80
51345--51399	22	2.5	22	81	0	74	20	16	40	23	1.91
51545--51737	20	9.6	20	82	5	219	19	19	25	35	1.95
51545--51737	60	3.2	60	83	0	251	19	19	25	35	1.95
51793--51844	20	2.6	20	96	0	95	21	13	26	38	1.90
53104--53193	14	5.7	14	74	23	81	42	23	25	8	1.83
53096--53210	33	3.5	33	95	0	212	45	20	24	9	1.81
53103--53215	19	6.8	18	72	23	88	43	22	24	9	1.83
53227--53283	14	3.7	14	75	20	60	8	24	22	43	1.81
53211--53291	33	2.5	33	95	0	144	8	22	22	46	1.78
53268--53343	21	3.7	21	83	3	109	11	25	17	46	1.82
53267--53344	41	1.9	41	97	0	147	12	25	16	44	1.83
53423--53493	33	2.2	33	89	0	106	47	16	23	11	1.79
53675--53729	22	2.5	22	81	0	74	20	16	40	23	1.91
53875--54068	20	9.6	20	82	5	221	19	19	25	35	1.95
53875--54068	60	3.2	60	83	0	253	19	19	25	35	1.95
54055--54137	21	4.0	21	73	6	78	25	16	24	33	1.96
54035--54133	42	2.4	43	77	11	100	21	18	23	37	1.94
56651--56686	2	18.0	2	100	0	72	50	0	0	50	1.00
56713--56773	31	2.0	32	87	6	90	26	11	9	52	1.68
65154--65198	22	2.1	22	83	4	56	33	0	13	53	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76289--76348	29	2.0	30	93	6	104	33	3	16	46	1.64
76427--76524	21	4.7	20	84	10	117	21	34	20	23	1.96
76437--76524	13	6.9	13	68	25	55	21	34	20	23	1.97
76547--76625	41	1.9	41	87	5	115	22	29	21	26	1.99
76547--76621	20	3.7	20	77	7	71	21	30	20	28	1.98

Tables:   1

The End!