genome.fa.s2091.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002091.1 Hibiscus syriacus cultivar Beakdansim tig00004264_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156045

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2382--2429	23	2.0	24	92	4	80	43	10	14	31	1.79
3274--3315	2	21.0	2	100	0	84	50	0	0	50	1.00
16711--16741	16	1.9	16	100	0	62	19	12	0	67	1.22
31288--31486	98	2.0	99	90	5	314	29	16	18	36	1.93
39352--39392	14	2.9	14	92	3	64	48	0	2	48	1.14
40234--40268	15	2.3	15	100	0	70	37	14	5	42	1.69
40764--41078	84	3.7	85	81	5	386	27	20	25	27	1.99
40740--41072	171	1.9	171	90	1	524	26	19	25	28	1.99
42531--42588	28	2.1	28	93	0	98	34	8	6	50	1.60
46395--46466	35	2.1	35	100	0	144	40	8	2	48	1.48
46814--46841	14	2.0	14	100	0	56	35	7	14	42	1.73
50625--50655	8	3.9	8	95	0	53	41	0	58	0	0.98
57185--57220	16	2.2	16	90	0	54	25	5	16	52	1.65
60725--60803	32	2.5	32	93	0	140	27	29	34	8	1.87
60790--60884	29	3.3	29	95	0	163	13	30	32	23	1.93
60911--61026	50	2.4	50	90	7	170	20	37	18	22	1.94
61241--61279	16	2.3	18	86	8	55	38	0	5	56	1.22
61384--61475	46	2.0	48	85	12	129	41	0	10	47	1.38
61516--61592	34	2.3	33	82	10	95	41	0	11	46	1.40
61638--61684	16	3.0	16	84	9	53	29	0	10	59	1.31
61659--61689	15	2.1	14	94	5	53	38	0	6	54	1.26
63835--63867	17	1.9	17	93	0	57	45	12	6	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63862--63905	21	2.1	21	86	0	61	45	4	9	40	1.56
63872--63905	11	3.2	11	83	8	52	47	5	8	38	1.59
63834--63916	14	6.2	14	76	17	63	44	9	7	38	1.65
64020--64059	14	2.9	14	88	3	55	47	5	2	45	1.38
64002--64111	13	8.9	12	75	14	73	49	4	2	43	1.37
64018--64369	26	14.2	26	73	12	256	45	9	2	42	1.49
64072--64320	98	2.5	98	96	1	464	44	10	2	43	1.49
64153--64427	150	1.8	150	96	1	507	43	10	2	44	1.51
67266--67326	26	2.4	24	76	15	59	42	1	6	49	1.38
67560--67619	17	3.3	17	73	15	57	48	11	0	40	1.40
68115--68163	21	2.3	21	82	3	62	51	18	0	30	1.47
68592--68659	35	1.9	35	93	0	118	25	16	30	27	1.96
68699--68723	12	2.1	12	100	0	50	24	60	0	16	1.36
68991--69017	13	2.1	13	100	0	54	29	48	22	0	1.51
69038--69093	29	1.9	29	100	0	112	17	28	39	14	1.89
71224--71267	18	2.4	18	96	0	79	40	4	40	13	1.65
77091--77151	18	3.2	19	75	15	56	26	3	1	68	1.14
77169--77196	10	2.8	10	100	0	56	21	0	0	78	0.75
87875--87933	25	2.4	25	91	2	93	61	8	1	28	1.35
88308--88396	38	2.5	35	89	8	128	38	10	10	41	1.73
90252--90295	12	3.5	12	84	6	52	52	4	0	43	1.22
94979--95028	24	2.1	24	100	0	100	40	8	28	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95940--96097	76	2.1	76	87	5	223	60	9	1	27	1.38
95953--96098	75	1.9	75	90	2	231	58	10	2	28	1.42
97426--97455	15	2.0	15	100	0	60	33	26	6	33	1.83
97427--97461	15	2.5	14	90	9	54	37	20	8	34	1.83
105707--105768	30	2.1	30	90	0	97	32	25	14	27	1.95
105707--105754	15	3.1	16	73	11	55	27	27	16	29	1.97
105776--105909	66	2.0	66	97	0	250	26	22	26	25	2.00
106572--106808	58	4.1	59	80	7	272	48	14	9	26	1.75
106572--106808	116	2.0	116	85	4	318	48	14	9	26	1.75
107266--107300	2	17.5	2	100	0	70	48	0	0	51	1.00
108950--109047	45	2.2	46	88	3	146	51	5	1	42	1.31
109168--109236	28	2.4	28	83	7	77	46	8	5	39	1.59
109829--110126	43	6.9	43	76	13	236	24	18	5	52	1.65
112261--112313	3	17.3	3	96	3	97	0	32	0	67	0.91
112480--112522	21	2.0	21	86	0	59	46	2	16	34	1.60
119770--119832	22	2.8	22	76	9	65	53	0	3	42	1.16
119966--120022	22	2.5	22	82	2	78	57	1	0	40	1.09
119936--120001	19	3.6	18	78	21	75	53	4	1	40	1.31
119936--120016	22	4.2	19	73	23	64	54	3	1	40	1.26
120042--120069	11	2.5	11	100	0	56	39	7	0	53	1.28
122244--122282	19	2.1	18	90	4	60	28	15	25	30	1.96
128434--128458	12	2.1	12	100	0	50	64	8	0	28	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131536--131613	39	2.1	37	90	4	120	52	10	12	24	1.70
138035--138062	2	14.0	2	100	0	56	50	0	0	50	1.00
138327--138374	24	2.0	24	100	0	96	29	4	20	45	1.70
146294--146328	2	17.5	2	100	0	70	51	0	0	48	1.00
146625--146677	21	2.5	21	72	9	54	50	0	1	47	1.12
147827--148003	6	28.7	6	82	10	205	32	3	18	45	1.68
154889--155036	61	2.4	62	88	5	210	36	12	4	47	1.60
154856--155036	61	2.9	61	83	11	208	34	12	4	48	1.62
154959--155003	18	2.6	17	80	10	56	40	6	4	48	1.49

Tables:   1

The End!