Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002093.1 Hibiscus syriacus cultivar Beakdansim tig00004274_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128441

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1000--1041
18
2.3
19
80
12
52
38
0
2
59
1.10
7457--7576
63
1.9
62
84
1
159
35
16
16
30
1.92
7477--7577
31
3.2
31
77
12
91
34
13
17
33
1.90
11479--11528
26
1.9
26
91
0
82
36
12
16
36
1.85
16222--16299
40
2.0
40
94
0
138
34
5
29
30
1.79
20889--20951
32
2.0
31
81
3
72
28
4
3
63
1.30
22146--22170
2
12.5
2
100
0
50
48
0
0
52
1.00
23431--23457
2
13.5
2
100
0
54
51
0
0
48
1.00
24174--24420
129
1.9
129
94
0
431
36
14
12
36
1.85
24750--24812
28
2.3
27
78
8
63
46
1
3
49
1.27
24892--24925
16
2.0
18
88
11
54
64
5
2
26
1.30
25048--25090
21
2.0
21
100
0
86
39
0
13
46
1.44
25059--25144
35
2.5
35
84
0
100
37
1
20
40
1.61
26763--26796
2
17.0
2
87
0
50
47
2
2
47
1.32
28149--28193
12
3.7
12
82
11
56
57
0
0
42
0.98
28405--28446
20
2.1
20
100
0
84
38
16
19
26
1.92
28504--29137
105
6.0
105
97
0
1187
22
18
25
33
1.97
39370--39403
10
3.4
10
87
0
50
73
0
5
20
1.04
40887--40920
2
17.0
2
87
0
50
47
2
2
47
1.32
42276--42320
12
3.7
12
82
11
56
57
0
0
42
0.98
42600--42677
38
2.1
36
81
9
86
47
1
3
47
1.28
42656--42700
17
2.6
18
82
3
56
53
4
0
42
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47702--47767
15
4.4
15
84
0
96
36
6
18
39
1.75
47702--47783
30
2.8
30
90
1
121
39
7
17
36
1.77
47717--47783
30
2.3
30
97
2
127
40
7
16
35
1.77
47732--47781
15
3.4
14
75
8
55
42
6
16
36
1.72
47766--47815
20
2.5
20
90
3
82
42
10
14
34
1.78
47914--48004
21
4.2
22
72
16
66
47
1
0
51
1.07
47909--48021
49
2.3
47
78
15
113
48
0
0
50
1.06
48140--48317
30
6.4
28
69
21
106
51
1
0
46
1.12
48140--48289
59
2.6
59
77
13
157
50
1
0
47
1.14
48217--48262
18
2.6
19
83
10
53
43
2
0
54
1.12
48238--48321
31
2.8
31
75
18
88
52
0
0
47
1.00
48257--48300
22
2.0
23
86
4
63
54
0
0
45
0.99
48159--48326
54
2.9
59
73
20
151
51
1
0
47
1.08
48262--48307
22
2.1
22
84
8
58
54
0
0
45
0.99
48255--48313
17
3.6
16
76
15
59
54
0
0
45
0.99
48269--48327
26
2.2
28
79
14
70
52
0
0
47
1.00
48502--48616
42
2.7
42
91
2
187
46
19
16
18
1.85
49927--50028
52
1.9
53
86
2
143
38
19
8
33
1.83
51939--51975
19
1.9
19
89
10
58
51
10
2
35
1.51
52058--53292
619
2.0
619
96
0
2290
38
12
16
32
1.87
54300--54342
21
2.0
21
81
0
50
30
30
25
13
1.94
59320--59370
18
2.7
18
87
9
66
5
0
17
76
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59740--59824
12
6.8
12
79
11
91
25
4
32
36
1.77
59777--59831
15
3.9
15
76
13
62
29
1
32
36
1.68
66594--66683
20
4.5
20
88
0
117
43
18
14
23
1.87
66677--66722
20
2.3
20
100
0
92
43
26
15
15
1.85
67059--67134
20
3.8
20
78
0
89
21
18
17
43
1.88
67059--67134
40
1.9
40
83
0
98
21
18
17
43
1.88
67121--67160
21
1.9
21
94
0
71
20
12
30
37
1.89
74074--74113
21
1.9
21
84
0
53
22
2
37
37
1.68
79523--79549
2
13.5
2
100
0
54
51
0
48
0
1.00
84115--84152
14
2.9
14
88
7
53
42
13
18
26
1.87
84989--85032
23
1.9
23
90
0
70
29
25
27
18
1.98
86551--86592
17
2.5
17
92
0
66
64
0
30
4
1.14
87689--87750
31
2.0
31
90
6
99
22
11
11
54
1.67
96044--96233
90
2.1
90
97
0
353
27
11
17
43
1.83
97820--97858
20
2.0
20
89
0
60
30
12
0
56
1.37
112502--112541
20
2.0
20
85
0
53
2
30
0
67
1.04
122649--123118
226
2.1
229
89
5
713
28
13
17
40
1.87

Tables:   1

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