Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002094.1 Hibiscus syriacus cultivar Beakdansim tig00004275_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118242

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
587--689
34
3.0
34
97
0
188
33
33
17
16
1.92
10487--10924
216
2.0
218
88
8
647
28
13
18
39
1.89
23772--23817
2
22.5
2
86
4
65
47
4
2
45
1.34
29697--29733
19
1.9
19
88
0
56
24
2
0
72
0.97
34240--34265
2
13.0
2
100
0
52
50
0
0
50
1.00
34508--34559
15
3.5
15
78
5
70
17
15
30
36
1.91
34583--34668
38
2.3
38
93
0
154
27
18
17
36
1.94
34629--34776
77
1.9
77
87
2
217
33
19
20
26
1.96
38319--38426
53
2.0
53
83
0
135
31
24
15
28
1.96
38685--38712
2
14.0
2
100
0
56
50
0
0
50
1.00
41219--41286
2
34.0
2
100
0
136
50
0
0
50
1.00
47571--47640
36
2.0
35
81
13
81
50
7
4
38
1.50
56886--56982
44
2.1
47
88
7
146
28
11
19
40
1.86
59439--59485
24
2.0
24
87
8
69
34
14
2
48
1.56
73109--73138
6
4.8
6
92
8
51
20
0
13
66
1.24
73476--73519
21
2.1
21
87
4
63
31
9
4
54
1.52
85454--85556
31
3.3
31
100
0
206
43
13
9
33
1.77
90469--90525
29
2.0
29
96
3
107
57
3
10
28
1.48
93010--93187
87
2.0
87
96
0
329
47
4
15
32
1.65
93010--93216
87
2.4
86
88
4
256
49
5
14
30
1.66
93960--93995
17
2.0
19
89
10
58
61
0
0
38
0.96
99368--99402
2
17.5
2
100
0
70
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115989--116037
24
2.0
24
92
0
80
42
12
14
30
1.82
116908--116952
2
22.5
2
100
0
90
51
0
0
48
1.00

Tables:   1

The End!