Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002096.1 Hibiscus syriacus cultivar Beakdansim tig00004279_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84435

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9830--9880
27
1.9
26
84
11
68
50
3
21
23
1.65
12324--12362
2
19.5
2
100
0
78
51
0
0
48
1.00
17640--17843
97
2.1
95
83
1
255
30
10
16
42
1.82
19851--19920
29
2.3
30
83
9
81
47
5
14
32
1.68
20920--20974
28
2.0
28
88
0
83
32
10
21
34
1.89
23429--23473
20
2.2
20
88
7
65
46
0
2
51
1.13
28740--28792
13
3.8
13
77
18
52
58
0
0
41
0.98
30747--30778
2
16.0
2
100
0
64
50
0
0
50
1.00
32499--32530
3
10.3
3
93
6
55
62
0
0
37
0.95
32493--32530
13
3.0
13
92
3
60
60
0
0
39
0.97
34692--34736
21
2.1
21
88
8
65
31
15
6
46
1.72
38944--38977
16
2.1
16
94
0
59
32
8
26
32
1.87
64373--64419
18
2.6
18
86
0
67
57
6
0
36
1.24
67532--67773
81
3.0
81
88
0
340
33
21
20
24
1.97
67533--67818
81
3.6
78
85
3
288
33
21
21
23
1.97
71454--71555
2
57.0
2
75
21
93
53
0
0
46
1.00
71454--71538
34
2.4
36
90
5
138
55
0
0
44
0.99
73714--73872
82
1.9
82
80
7
180
33
11
30
23
1.90
77350--77573
80
2.8
80
88
4
315
35
26
18
19
1.95
77541--77595
23
2.4
23
96
3
103
29
29
16
25
1.97
77461--77675
103
2.1
103
94
2
380
32
26
19
22
1.97
77564--77764
80
2.5
80
96
0
366
29
25
21
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77381--77757
183
2.1
183
90
3
607
31
25
20
22
1.98
79592--79625
18
1.9
18
94
5
61
29
17
0
52
1.45

Tables:   1

The End!