genome.fa.s2097.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002097.1 Hibiscus syriacus cultivar Beakdansim tig00004281_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57994

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2429--2579	35	4.2	36	79	9	184	33	5	15	45	1.71
2429--2579	18	8.5	18	81	8	193	33	5	15	45	1.71
3663--3705	15	2.7	15	89	7	59	34	23	11	30	1.90
4611--4664	18	2.8	20	88	8	76	38	5	0	55	1.23
4592--4670	15	5.2	14	78	19	63	41	3	0	54	1.18
4605--4670	18	3.4	19	78	15	73	39	4	0	56	1.20
4612--4681	23	3.0	23	75	14	72	37	5	1	55	1.32
4700--4744	22	2.0	23	86	4	65	48	2	0	48	1.13
12547--13008	113	4.1	113	91	3	713	45	13	14	25	1.82
13079--13147	30	2.2	30	80	15	77	34	5	15	43	1.71
13237--13310	19	4.2	19	75	16	86	21	40	24	13	1.89
13262--13289	14	2.0	14	100	0	56	28	35	21	14	1.92
13243--13308	33	2.0	33	90	0	105	22	37	24	15	1.92
13335--13374	20	2.0	20	100	0	80	15	45	25	15	1.84
13731--13800	34	2.1	32	86	5	95	34	15	28	21	1.94
14756--14803	23	2.1	23	88	0	69	39	14	6	39	1.71
15580--15641	24	2.6	24	92	0	97	11	8	20	59	1.57
16550--16592	16	2.7	16	96	0	77	9	11	20	58	1.61
17557--17648	36	2.5	36	87	1	130	28	27	17	27	1.98
22545--23027	194	2.6	194	90	5	755	37	27	12	23	1.90
25770--25799	2	15.0	2	92	0	51	46	0	0	53	1.00
28884--28914	2	15.5	2	100	0	62	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32822--32888	30	2.2	30	89	0	98	46	13	14	25	1.82
34046--34084	20	2.0	21	85	10	55	28	0	30	41	1.57
36404--36462	21	2.8	21	71	0	55	25	22	27	25	2.00
38248--38408	65	2.5	65	88	6	238	28	16	22	31	1.96
38249--38458	65	3.2	64	82	8	223	27	17	23	31	1.97
48209--48251	17	2.5	17	96	0	77	20	18	27	32	1.96
53089--53139	20	2.5	20	93	0	84	49	11	19	19	1.79
55318--55407	44	2.0	46	95	4	166	30	13	21	35	1.91

Tables:   1

The End!