Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002098.1 Hibiscus syriacus cultivar Beakdansim tig00004282_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62244

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9508--9548
21
2.0
21
90
0
64
43
0
53
2
1.13
9505--9549
12
3.8
12
84
0
54
44
0
53
2
1.13
10519--10825
105
3.0
106
92
7
516
25
11
22
41
1.87
15868--15912
18
2.5
18
85
0
63
35
13
28
22
1.92
18190--18233
15
3.1
13
81
18
52
15
2
4
77
1.04
19605--19689
30
2.9
29
76
13
86
23
8
15
52
1.69
21737--21797
28
2.1
29
87
3
88
34
8
13
44
1.73
21977--22003
12
2.2
12
100
0
54
37
7
14
40
1.74
22207--22280
38
1.9
38
94
0
130
32
25
6
35
1.82
22578--22610
15
2.3
15
89
5
50
57
12
15
15
1.65
24908--24949
21
2.0
21
90
0
66
30
11
7
50
1.66
24938--25046
33
3.4
32
88
6
159
32
8
13
45
1.73
25088--25144
15
3.6
15
71
13
51
35
12
12
40
1.80
31280--31330
14
3.5
14
81
5
57
64
1
1
31
1.15
34350--34407
27
2.1
27
100
0
116
48
3
3
44
1.36
34359--34411
16
3.6
16
69
23
53
49
3
1
45
1.31
34668--34732
29
2.2
29
83
5
76
46
6
16
30
1.72
34716--34791
31
2.5
31
84
2
100
40
9
17
32
1.81
37270--37328
31
1.9
30
89
3
91
55
13
8
22
1.64
43546--43579
2
17.5
2
93
6
61
52
0
0
47
1.00
43616--43641
2
13.0
2
100
0
52
50
0
0
50
1.00
43565--43690
49
2.5
49
92
2
198
42
15
3
38
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43665--43710
2
24.0
2
91
8
78
50
0
0
50
1.00
48113--48459
41
8.5
41
79
6
323
31
10
20
37
1.87
48111--48426
81
3.9
81
76
9
279
31
10
19
38
1.86
49226--49299
36
2.1
36
100
0
148
28
28
10
32
1.91
49340--49379
12
3.7
12
75
25
52
25
17
37
20
1.94
49333--49427
20
4.7
20
86
2
127
26
20
32
21
1.97
49333--49427
41
2.3
40
87
1
127
26
20
32
21
1.97
49594--49651
30
2.0
29
90
10
91
44
17
5
32
1.70
49594--49653
29
2.0
30
93
6
104
43
16
6
33
1.74
49764--49803
21
1.9
21
89
0
62
52
7
10
30
1.62
57507--57546
21
1.9
22
90
10
66
12
5
40
42
1.64
57636--57710
20
3.7
20
77
7
71
28
20
30
21
1.98
57632--57710
41
1.9
41
87
5
115
26
21
29
22
1.99
57733--57828
13
7.9
13
66
30
52
23
20
33
21
1.97
57783--57838
21
2.7
21
97
0
103
23
19
37
19
1.94
57907--57975
29
2.3
30
87
9
97
47
15
4
31
1.65
57917--57976
29
2.0
30
93
6
104
46
16
3
33
1.64
58264--58327
31
2.1
31
85
5
85
32
9
18
39
1.83

Tables:   1

The End!