Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002099.1 Hibiscus syriacus cultivar Beakdansim tig00004284_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78696

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12625--12709
11
7.2
11
72
22
66
31
36
3
28
1.74
12622--12726
36
2.9
36
95
1
185
30
36
4
28
1.78
13042--13117
35
2.1
37
87
4
111
28
3
35
31
1.76
17319--17359
13
3.2
13
76
16
50
78
7
14
0
0.96
17327--17385
6
10.2
6
78
14
70
81
1
16
0
0.78
17333--17382
5
10.2
5
76
20
52
82
2
16
0
0.77
17328--17385
11
5.1
11
86
12
73
81
1
17
0
0.78
17319--17385
24
2.8
24
86
10
86
79
4
16
0
0.90
40590--40651
26
2.3
27
86
2
81
70
8
4
16
1.28
52122--52278
11
13.2
11
71
23
106
28
3
36
31
1.75
52105--52281
36
4.9
36
96
0
320
28
4
36
30
1.77
52105--52278
23
7.3
24
71
22
102
28
4
36
31
1.76
52619--52666
20
2.5
20
86
3
62
45
6
14
33
1.70
57209--57255
16
2.8
16
81
12
51
68
0
17
14
1.22
57881--58037
11
13.2
11
71
23
97
29
4
35
30
1.77
57864--58040
36
4.9
36
93
0
302
29
5
35
29
1.79
57864--58037
23
7.3
24
71
22
93
29
4
35
30
1.78
58378--58428
19
2.6
20
87
3
68
45
5
15
33
1.71
62736--62778
18
2.4
18
100
0
86
48
4
25
20
1.69
62815--62902
11
7.3
12
72
23
62
28
3
36
31
1.74
62797--62900
36
2.9
35
92
4
172
27
3
36
31
1.75
66225--66263
18
2.0
20
90
9
64
66
0
10
23
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66219--66267
19
2.4
21
83
16
68
67
0
8
24
1.18
71486--71528
18
2.7
16
82
17
54
2
20
2
74
1.04
75422--75466
18
2.5
18
96
0
81
53
4
22
20
1.63
75501--75565
13
5.4
12
75
21
57
29
3
35
32
1.73
75483--75586
36
2.9
36
92
2
167
28
4
34
31
1.78

Tables:   1

The End!