Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000021.1 Hibiscus syriacus cultivar Beakdansim tig00000037_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89241

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4225--4407
83
2.2
82
85
0
231
29
13
19
37
1.90
4337--4488
41
3.7
41
78
8
157
28
15
18
37
1.91
4225--4468
82
3.0
82
82
3
258
30
14
19
35
1.92
7126--7151
2
13.0
2
100
0
52
50
0
0
50
1.00
8027--8191
43
3.8
43
87
0
231
38
20
18
23
1.93
8026--8201
86
2.0
86
88
0
262
37
22
18
22
1.94
8764--8948
43
4.3
43
88
0
271
38
23
17
20
1.93
7457--8945
743
2.0
743
98
0
2861
32
16
16
34
1.92
9278--9326
19
2.5
19
86
3
62
20
0
12
67
1.22
29501--29525
2
12.5
2
100
0
50
48
0
0
52
1.00
40075--40109
16
2.2
16
100
0
70
42
5
14
37
1.69
42168--42287
44
2.8
43
83
7
138
30
21
8
40
1.83
42391--42472
40
2.0
40
92
0
137
31
28
17
23
1.96
42534--42569
17
2.1
17
100
0
72
22
16
22
38
1.93
45186--45218
2
16.5
2
100
0
66
51
0
0
48
1.00
46720--46911
96
2.0
95
97
1
366
27
20
24
28
1.99
49491--49557
30
2.2
30
89
0
107
38
7
2
50
1.46
56177--56244
32
2.1
32
86
0
91
23
13
23
39
1.90
56229--56269
16
2.6
16
92
0
73
19
17
39
24
1.92
56229--56331
32
3.2
32
74
9
102
21
15
34
28
1.94
56162--56331
80
2.1
80
81
4
191
21
14
31
32
1.93
56243--56342
32
3.1
32
77
11
123
19
15
34
32
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61309--61365
16
3.6
16
85
0
78
5
15
31
47
1.68
61310--61376
32
2.1
32
83
5
82
8
14
28
47
1.75
64716--64750
3
11.7
3
90
0
52
60
0
2
37
1.12
64999--65097
39
2.4
42
91
5
159
19
19
14
47
1.82
65041--65696
117
5.6
117
93
1
1082
25
21
15
38
1.92
65869--65987
42
2.9
41
87
6
168
32
18
21
26
1.97
67021--67109
30
3.0
30
83
4
101
33
24
21
20
1.97
67066--67142
31
2.5
31
83
6
86
36
23
19
20
1.95
69905--70067
54
3.0
54
90
0
254
26
22
11
40
1.87
74639--74666
12
2.3
12
100
0
56
39
17
25
17
1.92
78577--78644
3
22.7
3
95
0
118
63
0
1
35
1.04
83324--83375
26
2.0
26
96
0
95
53
7
21
17
1.68
87072--87113
18
2.3
18
87
4
57
23
4
4
66
1.30
87698--87740
2
21.5
2
100
0
86
48
0
0
51
1.00
87893--87917
8
3.1
8
100
0
50
64
0
0
36
0.94

Tables:   1

The End!