genome.fa.s210.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000210.1 Hibiscus syriacus cultivar Beakdansim tig00000373_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48984

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1382--1447	16	4.3	14	75	17	60	22	7	4	65	1.37
1612--1655	2	22.5	2	95	4	81	47	0	0	52	1.00
2305--2341	9	4.3	9	86	6	51	72	2	0	24	0.97
2305--2341	17	2.2	17	90	9	58	72	2	0	24	0.97
2621--2671	2	26.0	2	96	4	95	49	0	0	50	1.00
3988--4040	22	2.3	23	81	12	65	13	18	33	33	1.90
4052--4102	3	17.3	3	95	4	95	64	0	0	35	0.94
4150--4179	14	2.1	14	100	0	60	60	13	20	6	1.55
4278--4741	45	10.2	45	92	1	757	33	19	20	25	1.96
5426--5468	22	2.0	22	100	0	86	39	13	9	37	1.78
5827--5980	54	2.9	53	88	2	227	26	21	12	39	1.89
13900--14272	152	2.5	146	81	7	380	44	9	7	38	1.64
14289--14342	2	27.0	2	100	0	108	50	0	0	50	1.00
15803--15831	2	14.5	2	100	0	58	51	0	0	48	1.00
16556--16644	19	4.6	19	77	17	103	4	12	65	17	1.42
16791--16850	29	2.0	29	83	6	75	56	5	3	35	1.37
17558--17603	2	23.0	2	100	0	92	0	50	0	50	1.00
18638--18666	14	2.1	14	100	0	58	34	6	17	41	1.76
22616--22666	19	2.6	20	90	3	77	43	23	17	15	1.88
22616--22893	20	13.6	20	78	5	162	40	19	21	17	1.92
22741--22883	63	2.3	63	86	5	204	37	18	25	19	1.94
22719--22893	83	2.1	83	89	0	260	37	18	24	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22981--23055	6	13.5	6	98	1	108	28	54	17	0	1.43
23761--23811	6	8.5	6	100	0	102	0	15	50	33	1.44
24265--24363	38	2.6	38	78	10	103	42	5	25	27	1.75
27390--27431	18	2.3	18	84	8	50	64	16	9	9	1.49
32776--32894	42	2.9	42	68	16	104	28	10	21	40	1.85
32776--33063	83	3.5	83	78	7	237	30	15	19	34	1.93
33771--33811	18	2.3	18	86	0	55	29	4	19	46	1.71
34460--34506	13	3.6	13	100	0	94	21	17	21	40	1.91
35478--35807	43	7.8	42	81	4	331	23	21	19	35	1.96
37203--37290	20	4.3	20	83	8	115	30	28	18	22	1.97
38112--38165	24	2.2	24	90	0	81	22	18	18	40	1.91
38490--38535	19	2.4	19	85	3	56	21	17	30	30	1.96
38501--38537	19	1.9	19	94	0	65	21	16	29	32	1.95
46565--46607	19	2.3	19	84	12	61	72	2	16	9	1.21
48495--48523	15	1.9	15	100	0	58	27	17	27	27	1.97

Tables:   1

The End!