Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002100.1 Hibiscus syriacus cultivar Beakdansim tig00004297_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61713

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
973--1054
42
2.0
42
90
0
128
28
21
18
31
1.97
752--1317
215
2.6
221
85
6
749
28
20
19
31
1.97
1188--1271
42
2.0
42
85
0
114
26
19
21
33
1.97
1979--2028
3
17.7
3
76
12
52
34
2
2
62
1.18
1965--2021
11
5.0
12
79
14
59
36
1
1
59
1.18
1956--2028
14
5.2
14
70
9
51
36
1
1
60
1.14
2809--2833
12
2.1
12
100
0
50
44
32
8
16
1.76
3611--3666
26
2.2
26
96
0
103
35
37
0
26
1.57
6638--6702
27
2.4
28
80
12
80
61
10
16
10
1.56
6692--6716
5
5.0
5
100
0
50
80
0
20
0
0.72
10652--10690
13
3.0
13
96
0
69
35
0
33
30
1.58
14711--14751
14
3.0
14
89
3
57
21
41
0
36
1.54
14706--14753
13
3.8
13
84
10
55
22
41
0
35
1.54
26451--26550
50
2.0
50
100
0
200
24
14
20
42
1.88
26574--26645
37
2.0
36
86
10
103
31
34
4
29
1.77
26802--26835
15
2.1
17
89
10
54
17
26
0
55
1.42
27096--27142
14
3.1
15
75
12
51
72
6
19
2
1.17
31047--31126
35
2.2
37
91
4
128
31
37
3
27
1.74
33764--33831
28
2.4
28
76
13
68
60
11
16
11
1.59
43933--43985
17
3.1
17
83
0
70
39
5
15
39
1.70
43992--44051
16
3.5
17
84
8
70
41
11
15
31
1.82
51752--51807
13
4.7
11
74
21
51
0
19
1
78
0.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51752--51807
18
3.1
18
82
17
71
0
19
1
78
0.84
52123--52162
12
3.2
12
85
3
53
22
5
35
37
1.76
54347--54381
18
1.9
18
100
0
70
51
5
31
11
1.61
59006--59073
17
3.9
17
79
9
66
42
5
11
39
1.66
59065--59122
17
3.5
16
83
6
71
41
12
15
31
1.84

Tables:   1

The End!