genome.fa.s2101.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002101.1 Hibiscus syriacus cultivar Beakdansim tig00004299_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128084

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1848--1900	16	3.4	16	76	19	58	69	0	15	15	1.19
2520--2605	13	7.2	12	72	22	58	29	3	37	30	1.74
2502--2606	36	2.9	36	95	1	185	28	4	36	30	1.78
2944--2992	19	2.5	20	86	3	64	46	6	14	32	1.69
7259--7301	18	2.4	18	100	0	86	48	4	25	20	1.69
7335--7422	13	7.3	12	72	23	62	29	3	36	30	1.74
7323--7420	36	2.8	36	96	1	180	28	4	36	30	1.76
19822--19866	22	2.2	20	84	8	54	0	13	6	80	0.91
20202--20246	18	2.5	18	96	0	81	53	4	22	20	1.63
20281--20366	13	7.2	12	72	22	58	29	3	37	30	1.74
20263--20367	36	2.9	36	95	1	185	28	4	36	30	1.78
27400--27442	18	2.4	18	92	0	68	0	4	9	86	0.71
27388--27445	31	1.9	30	89	3	89	0	5	10	84	0.77
27398--27444	10	4.9	10	84	10	62	0	4	8	87	0.67
30131--30215	11	7.2	11	72	22	66	31	35	3	29	1.75
30128--30232	36	2.9	36	92	1	176	30	35	4	29	1.78
30680--30726	14	3.1	15	75	12	51	72	6	19	2	1.17
36884--36988	36	2.9	36	94	1	176	29	36	4	29	1.78
56738--56792	26	2.1	26	83	6	67	36	14	25	23	1.93
63117--63201	11	7.2	11	72	22	66	31	35	3	29	1.75
63114--63218	36	2.9	36	92	1	167	30	35	5	28	1.81
63653--63699	14	3.1	15	75	12	51	72	6	19	2	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68756--68840	11	7.2	11	72	22	66	31	36	3	28	1.74
68753--68857	36	2.9	36	95	1	185	30	36	4	28	1.78
71310--71483	90	1.9	91	84	3	235	20	27	22	29	1.98
72272--72325	23	2.3	24	80	3	65	61	12	14	11	1.58
75687--75752	26	2.5	26	100	0	132	18	36	19	25	1.94
75721--75892	90	1.9	91	87	3	258	22	25	23	29	1.99
78103--78207	36	2.9	36	91	1	167	31	37	4	26	1.77
78652--78698	14	3.1	15	75	12	51	72	6	19	2	1.17
83819--83923	36	2.9	36	91	1	167	31	37	4	26	1.77
85832--86012	91	2.0	91	84	4	240	21	28	21	28	1.99
91612--91661	14	3.9	13	73	21	52	78	2	20	0	0.86
91606--91661	19	3.1	18	82	17	71	78	1	19	0	0.84
91606--91661	11	4.7	11	74	21	51	78	1	19	0	0.84
100218--100260	23	1.9	21	81	13	50	32	18	11	37	1.87
101960--102128	91	1.9	91	83	5	225	21	26	23	28	1.99
103390--103440	19	2.6	20	90	3	77	43	5	15	35	1.71
104349--104408	30	2.0	31	83	3	77	55	10	8	26	1.61
106792--106847	19	2.8	19	70	24	53	1	19	3	75	1.05
106789--106847	13	4.5	12	80	16	64	1	20	3	74	1.05
106778--106854	17	4.4	18	72	25	67	3	19	5	71	1.21
106794--106845	27	1.9	27	88	7	79	1	19	3	75	1.06
107553--107603	19	2.6	20	90	3	77	43	5	15	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107895--107944	24	2.1	24	81	7	57	26	8	32	34	1.85
108513--108572	30	2.0	31	83	3	77	55	10	8	26	1.61
109704--109752	20	2.5	20	100	0	98	20	36	0	42	1.52
113238--113286	20	2.5	20	100	0	98	20	36	0	42	1.52
116775--116821	20	2.3	20	96	0	85	23	34	0	42	1.54

Tables:   1

The End!