Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002104.1 Hibiscus syriacus cultivar Beakdansim tig00004304_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55098

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6170--6207
19
2.0
20
89
5
60
44
18
13
23
1.85
10187--10215
15
1.9
15
100
0
58
62
24
0
13
1.32
13568--13649
30
2.7
30
82
0
101
57
7
10
24
1.58
15148--15206
31
1.9
31
92
0
100
40
6
10
42
1.65
15233--15281
22
2.2
22
85
3
62
55
12
0
32
1.37
15355--15408
14
3.6
14
72
18
54
57
7
1
33
1.37
15333--15525
32
6.7
32
75
22
201
52
12
0
33
1.44
15397--15439
22
2.0
22
100
0
86
51
13
0
34
1.42
15399--15447
22
2.2
22
88
3
71
55
14
0
30
1.40
15451--15493
22
2.0
22
100
0
86
51
13
0
34
1.42
15453--15501
22
2.2
22
88
3
71
55
14
0
30
1.40
15235--15525
86
3.5
83
83
10
319
52
13
0
33
1.43
15503--15546
21
2.1
21
95
0
79
52
15
0
31
1.44
15549--15696
15
9.5
15
82
10
172
50
2
0
47
1.12
15355--15681
54
6.5
48
84
9
238
51
8
0
39
1.36
16087--16203
42
2.8
41
90
3
180
17
17
19
46
1.85
16390--16438
19
2.4
22
83
16
61
40
0
0
59
0.98
16557--16601
23
2.0
23
86
0
63
53
2
2
42
1.25
17058--17097
3
13.7
3
94
5
73
67
0
0
32
0.91
19013--19054
12
3.0
15
73
20
54
21
0
14
64
1.29
19011--19055
13
3.5
12
77
16
54
24
0
13
62
1.31
21263--21334
23
3.1
24
78
13
71
22
13
9
54
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25159--25217
19
3.2
19
80
2
57
30
27
25
16
1.97
39122--39786
186
3.5
184
80
5
602
33
15
11
39
1.84
47904--47978
35
2.1
35
100
0
150
44
18
0
37
1.50
47974--48050
35
2.2
35
83
0
100
40
0
18
41
1.50
54703--54755
21
2.5
21
78
6
63
58
3
0
37
1.16

Tables:   1

The End!