Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002105.1 Hibiscus syriacus cultivar Beakdansim tig00004307_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85110
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:765 original size:21 final size:22
Alignment explanation
Indices: 740--783 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
730 TGCTCAAGAC
740 ACATGACC-GAGACAAAAGTCG
1 ACATGACCGGAGACAAAAGTCG
761 ACATGACCGGAGACAAAAGTCG
1 ACATGACCGGAGACAAAAGTCG
783 A
1 A
784 TTCATAGAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.43, C:0.23, G:0.25, T:0.09
Consensus pattern (22 bp):
ACATGACCGGAGACAAAAGTCG
Found at i:4086 original size:21 final size:21
Alignment explanation
Indices: 4050--4137 Score: 95
Period size: 21 Copynumber: 4.0 Consensus size: 21
4040 TTAGTACAGA
* *
4050 GGGAATCGATACCCCCTTGAAG
1 GGGAACCGATTCCCCC-TGAAG
* *
4072 GGGAACCAATTCCCCCTTTAAAG
1 GGGAACCGATTCCCCC--TGAAG
*
4095 GGGAACCGATTCCCCCTGTAG
1 GGGAACCGATTCCCCCTGAAG
*
4116 GGGAACCGATACCCCCTGAAG
1 GGGAACCGATTCCCCCTGAAG
4137 G
1 G
4138 TTCTGGTTAT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
21 23 0.41
22 13 0.23
23 20 0.36
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.17
Consensus pattern (21 bp):
GGGAACCGATTCCCCCTGAAG
Found at i:4095 original size:23 final size:22
Alignment explanation
Indices: 4050--4132 Score: 96
Period size: 23 Copynumber: 3.8 Consensus size: 22
4040 TTAGTACAGA
* * *
4050 GGGAATCGATACCCCCTTGAAG
1 GGGAACCGATTCCCCCTTTAAG
*
4072 GGGAACCAATTCCCCCTTTAAAG
1 GGGAACCGATTCCCCCTTT-AAG
*
4095 GGGAACCGATTCCCCCTGT-AG
1 GGGAACCGATTCCCCCTTTAAG
*
4116 GGGAACCGATACCCCCT
1 GGGAACCGATTCCCCCT
4133 GAAGGTTCTG
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
21 18 0.34
22 15 0.28
23 20 0.38
ACGTcount: A:0.25, C:0.33, G:0.24, T:0.18
Consensus pattern (22 bp):
GGGAACCGATTCCCCCTTTAAG
Found at i:9775 original size:3 final size:3
Alignment explanation
Indices: 9767--9815 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
9757 CGAGACTATA
9767 TAT TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9814 TA
1 TA
9816 CAAATCCATG
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 43 0.96
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:12425 original size:33 final size:33
Alignment explanation
Indices: 12359--12426 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
12349 GGCTTCCCTT
* * *
12359 GGATTCCCTCGCATAGCTCGCTTGGTTGCCCTC
1 GGATGCCCTCGCATAGCTCGCTTGGATGACCTC
12392 GGATGCCCTCGCATAGCTCG-TTCGGATGACCTC
1 GGATGCCCTCGCATAGCTCGCTT-GGATGACCTC
12425 GG
1 GG
12427 TCGGATGGCA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 2 0.06
33 29 0.94
ACGTcount: A:0.12, C:0.34, G:0.28, T:0.26
Consensus pattern (33 bp):
GGATGCCCTCGCATAGCTCGCTTGGATGACCTC
Found at i:24103 original size:18 final size:19
Alignment explanation
Indices: 24067--24103 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
24057 CACGGAATGT
24067 AAGATTACCAGTCGGAATAA
1 AAGATTACCAG-CGGAATAA
24087 AAGATTACCAG-GGAATA
1 AAGATTACCAGCGGAATA
24104 GGATTACCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.46, C:0.14, G:0.22, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGCGGAATAA
Found at i:24394 original size:15 final size:15
Alignment explanation
Indices: 24376--24406 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
24366 AAATTCTAAA
24376 TATTTAAATAAAAAT
1 TATTTAAATAAAAAT
*
24391 TATTTATATAAAAAT
1 TATTTAAATAAAAAT
24406 T
1 T
24407 CTATCTGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTTAAATAAAAAT
Found at i:27763 original size:15 final size:16
Alignment explanation
Indices: 27739--27771 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
27729 GCTCTTTTCT
27739 TTGATATT-AATAAAA
1 TTGATATTAAATAAAA
*
27754 TTGATTTTAAATAAAA
1 TTGATATTAAATAAAA
27770 TT
1 TT
27772 AAATAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (16 bp):
TTGATATTAAATAAAA
Found at i:27895 original size:24 final size:25
Alignment explanation
Indices: 27858--27904 Score: 62
Period size: 23 Copynumber: 1.9 Consensus size: 25
27848 TTCGATATTG
27858 AAAAATATTAAAATAATTTATTTAAA
1 AAAAATATTAAAATAA-TTATTTAAA
*
27884 AAAAATA-T-AAATTATTATTTA
1 AAAAATATTAAAATAATTATTTA
27905 TCATATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 7 0.35
24 5 0.25
25 1 0.05
26 7 0.35
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (25 bp):
AAAAATATTAAAATAATTATTTAAA
Found at i:29298 original size:3 final size:3
Alignment explanation
Indices: 29290--29330 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
29280 ATTTTTTATT
*
29290 TAA TAA TAA TAA T-A TAA TAA -AT TAA TAA TTAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA
29331 AATGAACTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
2 3 0.09
3 27 0.82
4 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:29585 original size:76 final size:76
Alignment explanation
Indices: 29459--30553 Score: 2048
Period size: 76 Copynumber: 14.4 Consensus size: 76
29449 GAAATGTTGA
*
29459 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAA-AACATCAAAAAGCTCCCG
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTT-AAGAACATCAAAAAGCTCTCG
29523 AAGGCTTTTTGG
65 AAGGCTTTTTGG
* *
29535 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
29600 AGGCTTTTTGG
66 AGGCTTTTTGG
*
29611 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAAAACATCAAAAAGCTCTCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
29676 AGGCTTTTTGG
66 AGGCTTTTTGG
29687 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
29752 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
29763 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
29828 AGGCTTTTTGG
66 AGGCTTTTTGG
*
29839 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
29904 AGGCTTTTTGG
66 AGGCTTTTTGG
29915 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
29980 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
29991 AAACATCATGCACTGAAAGACTTACAGATGACCCGAAGGCTTTAAGAATATCAAAAAGCTCTCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
30056 AGGCTTTTTGG
66 AGGCTTTTTGG
30067 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
30132 AGGCTTTTTGG
66 AGGCTTTTTGG
30143 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
30208 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
30219 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
30284 AGGCTTTTTGG
66 AGGCTTTTTGG
*
30295 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
30360 AGGCTTTTTGG
66 AGGCTTTTTGG
*
30371 AAACATCATGCACTGAAGGAATTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
30436 AGGCTTTTTGG
66 AGGCTTTTTGG
30447 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
30512 AGGCTTTTTGG
66 AGGCTTTTTGG
*
30523 AAACATCATGCACTGAAGGACTTATAGATGA
1 AAACATCATGCACTGAAGGACTTACAGATGA
30554 GGGAAATAGT
Statistics
Matches: 1001, Mismatches: 17, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
75 2 0.00
76 999 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (76 bp):
AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAGAACATCAAAAAGCTCTCGA
AGGCTTTTTGG
Found at i:31218 original size:113 final size:112
Alignment explanation
Indices: 30944--31480 Score: 737
Period size: 113 Copynumber: 4.8 Consensus size: 112
30934 ATCTCCTTCT
* * * *
30944 GTGATAGAATTA-TGCAAAAAGTTGAACACATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCA
1 GTGAT-GAATTAGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
* **
31008 GATGAGTTCTTCTCATTATGAA-CTTCTCTGGAAAAGCTGCTCCATCAA
65 GATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAA-ATAATCCATCAA
* * *
31056 GTGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAG
1 GTGATGAATTAGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
31121 ATGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAAATAATCCATCAA
66 ATGAGTTCTTCTCATTATGAACCTTCTCTGG-AAAAATAATCCATCAA
31169 GTGATGAATTCAGA-CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
1 GTGATGAATT-AGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
* * *
31233 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGATGATCCATCAA
65 GATGAGTTCTTCTCATTATGAACCTTCTCTGGAAA-AATAATCCATCAA
* * *
31282 ATAAT-AGATTCA-AGTAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC
1 GTGATGA-ATT-AGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC
* * **
31345 ATATGAGTTCTTCTCATTATGAA-CTTCTATGGAAATGTCAATCCATCGAA
64 AGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAAT-AATCCATC-AA
* * *
31395 -TGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAG
1 GTGATGAATTAGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
31459 ATGAGTTCTTCTCATTATGAAC
66 ATGAGTTCTTCTCATTATGAAC
31481 TCGACCTGGA
Statistics
Matches: 384, Mismatches: 29, Indels: 23
0.88 0.07 0.05
Matches are distributed among these distances:
111 5 0.01
112 175 0.46
113 198 0.52
114 6 0.02
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (112 bp):
GTGATGAATTAGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
ATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAATAATCCATCAA
Found at i:31349 original size:24 final size:23
Alignment explanation
Indices: 31314--31358 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
31304 TGAACAAATT
31314 CTTCTCATTATGAACTTCTTCTTC
1 CTTCTCATTATG-ACTTCTTCTTC
*
31338 CTTCTTCA-TATGAGTTCTTCT
1 CTTC-TCATTATGACTTCTTCT
31359 CATTATGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 8 0.42
24 8 0.42
25 3 0.16
ACGTcount: A:0.16, C:0.27, G:0.07, T:0.51
Consensus pattern (23 bp):
CTTCTCATTATGACTTCTTCTTC
Found at i:31390 original size:225 final size:226
Alignment explanation
Indices: 30957--31481 Score: 808
Period size: 225 Copynumber: 2.3 Consensus size: 226
30947 ATAGAATTAT
* * *
30957 GCAAAAAGTTGAACACATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * * * * **
31022 ATTATGAAC-TTCTCTGGAAAAGCTGCTCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAA
66 ATTATGAACTTTCTCTGGAAAAGATGATCCATCAAATAATAGATTCAAGCAAAAGGTTGAACAAA
* *
31086 TTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
131 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTATG
31151 GCAAAAATAATCCATC-AAGTGATGAATTCAGA
196 GCAAAAATAATCCATCGAA-TGATGAATT-AGA
31183 -CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* *
31247 ATTATGAACTTTCTCTGGAAATGATGATCCATCAAATAATAGATTCAAGTAAAAGGTTGAACAAA
66 ATTATGAACTTTCTCTGGAAAAGATGATCCATCAAATAATAGATTCAAGCAAAAGGTTGAACAAA
*
31312 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCATATGAGTTCTTCTCATTATGAA-CTTCTATG
131 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTATG
** * *
31376 G-AAATGTCAATCCATCGAATGATGGATTTGA
196 GCAAAAAT-AATCCATCGAATGATGAATTAGA
*
31407 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
31472 ATTATGAACT
66 ATTATGAACT
31482 CGACCTGGAA
Statistics
Matches: 275, Mismatches: 20, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
224 6 0.02
225 167 0.61
226 102 0.37
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (226 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTTTCTCTGGAAAAGATGATCCATCAAATAATAGATTCAAGCAAAAGGTTGAACAAA
TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTATG
GCAAAAATAATCCATCGAATGATGAATTAGA
Found at i:31494 original size:112 final size:111
Alignment explanation
Indices: 30957--31518 Score: 717
Period size: 112 Copynumber: 5.0 Consensus size: 111
30947 ATAGAATTAT
* * *
30957 GCAAAAAGTTGAACACATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* **
31022 ATTATGAACT-T-CTCTGGAAAAGCTGCTCCATCAAGTGATGGATTTGA
66 ATTATGAACTCTAC-CTGGAAATG-TAATCCATCAA-TGATGGATTTGA
*
31069 GCAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* ** * *
31134 ATTATGAAC-CTTCTCTGGCAAAAATAATCCATCAAGTGAT-GAATTCA
66 ATTATGAACTCTAC-CTGG-AAATGTAATCCATCAA-TGATGGATTTGA
31181 GACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
1 G-CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * * * **
31246 CATTATGAACT-TTCTCTGGAAATGATGATCCATCAAATAATAGATTCAA
65 CATTATGAACTCTAC-CTGGAAATG-TAATCCATC-AATGATGGATTTGA
* *
31295 GTAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCATATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
31360 ATTATGAACTTCTA--TGGAAATGTCAATCCATCGAATGATGGATTTGA
66 ATTATGAAC-TCTACCTGGAAATGT-AATCCATC-AATGATGGATTTGA
*
31407 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * *
31472 ATTATGAACTCGACCTGG-AATGTTGATCCATTGAATGATGGATTTGA
66 ATTATGAACTCTACCTGGAAATG-TAATCCA-TCAATGATGGATTTGA
31519 ACTTTGCTAA
Statistics
Matches: 405, Mismatches: 30, Indels: 30
0.87 0.06 0.06
Matches are distributed among these distances:
111 4 0.01
112 201 0.50
113 187 0.46
114 12 0.03
115 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (111 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTCTACCTGGAAATGTAATCCATCAATGATGGATTTGA
Found at i:31943 original size:22 final size:22
Alignment explanation
Indices: 31918--31972 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
31908 CATAAAGTTT
*
31918 TCATCTTTGAAAAGAGAATCTG
1 TCATCTTTGAAAAGAGAATCTA
*
31940 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
31962 TCATCTTTGAA
1 TCATCTTTGAA
31973 GAGTGTAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:34648 original size:83 final size:83
Alignment explanation
Indices: 34509--34681 Score: 303
Period size: 83 Copynumber: 2.1 Consensus size: 83
34499 CTTATTTCTC
*
34509 CTATGAGCAAATTCATCTTCTAAATTCAATGATTGGTTCTGTATAACCAGATCAGATAACTCAAA
1 CTATGAGCAAATTCATCTTCTAAATTCAATGATTGGTTCTGCATAACCAGATCAGATAACTCAAA
34574 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
* *
34592 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGCCA-AATCAGATCAGATAACTCAA
1 CTATGAGCAAATTCATCTTCTAAATTCAATGATTGGTTCTG-CATAACCAGATCAGATAACTCAA
34656 AGAACACTTCCAGAAGATG
65 AGAACACTTCCAGAAGATG
34675 CTATGAG
1 CTATGAG
34682 TCTCTTTCAG
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
83 85 0.99
84 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.28
Consensus pattern (83 bp):
CTATGAGCAAATTCATCTTCTAAATTCAATGATTGGTTCTGCATAACCAGATCAGATAACTCAAA
GAACACTTCCAGAAGATG
Found at i:36977 original size:20 final size:20
Alignment explanation
Indices: 36949--36986 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36939 GATTCAATTT
36949 TTTTCTTTT-TTCTTTTTTTG
1 TTTTCTTTTGTT-TTTTTTTG
*
36969 TTTTGTTTTGTTTTTTTT
1 TTTTCTTTTGTTTTTTTT
36987 CCTTCTTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.00, C:0.05, G:0.08, T:0.87
Consensus pattern (20 bp):
TTTTCTTTTGTTTTTTTTTG
Found at i:41674 original size:18 final size:17
Alignment explanation
Indices: 41626--41676 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
41616 AAATACTTGC
*
41626 AAATAAAATAAAACATAT
1 AAAT-AAATAAAAAATAT
*
41644 AAAT-ATTATAAAAATAAT
1 AAATAAATA-AAAAAT-AT
41662 AAATAAATAAAAAAT
1 AAATAAATAAAAAAT
41677 TTGAAAGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
16 3 0.11
17 5 0.19
18 16 0.59
19 3 0.11
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (17 bp):
AAATAAATAAAAAATAT
Found at i:42240 original size:15 final size:16
Alignment explanation
Indices: 42216--42248 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
42206 GCTCTTTTCT
42216 TTGATATT-AATAAAA
1 TTGATATTAAATAAAA
*
42231 TTGATTTTAAATAAAA
1 TTGATATTAAATAAAA
42247 TT
1 TT
42249 AAATAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (16 bp):
TTGATATTAAATAAAA
Found at i:42372 original size:24 final size:25
Alignment explanation
Indices: 42335--42381 Score: 62
Period size: 23 Copynumber: 1.9 Consensus size: 25
42325 TTCGATATTG
42335 AAAAATATTAAAATAATTTATTTAAA
1 AAAAATATTAAAATAA-TTATTTAAA
*
42361 AAAAATA-T-AAATTATTATTTA
1 AAAAATATTAAAATAATTATTTA
42382 TCATATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 7 0.35
24 5 0.25
25 1 0.05
26 7 0.35
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (25 bp):
AAAAATATTAAAATAATTATTTAAA
Found at i:43817 original size:3 final size:3
Alignment explanation
Indices: 43809--43849 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
43799 ATTTTTTATT
*
43809 TAA TAA TAA TAA T-A TAA TAA -AT TAA TAA TTAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA
43850 AATGAACTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
2 3 0.09
3 27 0.82
4 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:53990 original size:64 final size:64
Alignment explanation
Indices: 53922--54142 Score: 229
Period size: 64 Copynumber: 3.5 Consensus size: 64
53912 TTGAAGGTGT
* ** * * *
53922 ATCGATGCATTGGTAGTGCATCGATGCA-CTCTTTTAA-AATAAATACATCGAATGCAATTTGTG
1 ATCGATGCATAGGTAGTGCATCGATGCATC-CCATTAATAAGAAA-ACATCGAATACAATTAGTG
53985 C
64 C
* *
53986 ATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAAGGAAACATCGAATACAATTAGTGC
1 ATCGATGCATAGGTAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATACAATTAGTGC
* * *
54050 ATCGATGCATAAGGCA-TGCATCGATGCATCCCAGTAATAA-ACAAACATCGAATACATTTTA-T
1 ATCGATGCAT-AGGTAGTGCATCGATGCATCCCATTAATAAGA-AAACATCGAATACA-ATTAGT
54112 GC
63 GC
* *
54114 ACCGATGCATCA-GTAATGCATCGATGCAT
1 ATCGATGCAT-AGGTAGTGCATCGATGCAT
54143 ACCTTCATTA
Statistics
Matches: 135, Mismatches: 16, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
63 2 0.01
64 122 0.90
65 11 0.08
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (64 bp):
ATCGATGCATAGGTAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATACAATTAGTGC
Found at i:54602 original size:14 final size:14
Alignment explanation
Indices: 54583--54615 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
54573 ATGGGATAAC
54583 ATGATAAGATGACA
1 ATGATAAGATGACA
54597 ATGATAAGATGACA
1 ATGATAAGATGACA
54611 ATGAT
1 ATGAT
54616 TTACATGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.48, C:0.06, G:0.21, T:0.24
Consensus pattern (14 bp):
ATGATAAGATGACA
Found at i:55114 original size:103 final size:103
Alignment explanation
Indices: 54889--55106 Score: 400
Period size: 103 Copynumber: 2.1 Consensus size: 103
54879 GTCGAGGGTC
54889 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
* *
54954 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
*
54992 TATATGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
55057 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
55095 TATGTGGTCCTT
1 TATGTGGTCCTT
55107 ATGGACATTA
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 110 1.00
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
Found at i:55167 original size:47 final size:47
Alignment explanation
Indices: 55113--55232 Score: 197
Period size: 47 Copynumber: 2.6 Consensus size: 47
55103 CCTTATGGAC
* *
55113 ATTATTATATGGCACTACGGTGCAATTCTACGCGGCACTCCGGTGCA
1 ATTATTATATGGCACTACGGTGCAATTCTACACGGCACTCCGGTACA
55160 ATTATTATATGGCACTACGGTGCAATTCTACACGGCACTCCGGTACA
1 ATTATTATATGGCACTACGGTGCAATTCTACACGGCACTCCGGTACA
* *
55207 ATTA-TATGTGGCACTTCGGTGCAATT
1 ATTATTATATGGCACTACGGTGCAATT
55233 ATATGAGTTG
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
46 20 0.29
47 49 0.71
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (47 bp):
ATTATTATATGGCACTACGGTGCAATTCTACACGGCACTCCGGTACA
Found at i:55237 original size:23 final size:23
Alignment explanation
Indices: 55113--55236 Score: 122
Period size: 23 Copynumber: 5.3 Consensus size: 23
55103 CCTTATGGAC
55113 ATTATTATATGGCACTACGGTGCA
1 ATTA-TATATGGCACTACGGTGCA
* *** *
55137 ATTCTACGCGGCACTCCGGTGCA
1 ATTATATATGGCACTACGGTGCA
55160 ATTATTATATGGCACTACGGTGCA
1 ATTA-TATATGGCACTACGGTGCA
* * * * *
55184 ATTCTACACGGCACTCCGGTACA
1 ATTATATATGGCACTACGGTGCA
* *
55207 ATTATATGTGGCACTTCGGTGCA
1 ATTATATATGGCACTACGGTGCA
55230 ATTATAT
1 ATTATAT
55237 GAGTTGTGGT
Statistics
Matches: 78, Mismatches: 21, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
23 57 0.73
24 21 0.27
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.31
Consensus pattern (23 bp):
ATTATATATGGCACTACGGTGCA
Found at i:61535 original size:23 final size:23
Alignment explanation
Indices: 61477--61545 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
61467 CATTATTATA
* * *
61477 TGGCACTACAGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTATG
* *
61500 CGGTAC-TCTGGTGCAATTCTATG
1 TGGCACTTC-GGTGCAATTCTATG
*
61523 TGGCACTTCGGTGCAATTATATG
1 TGGCACTTCGGTGCAATTCTATG
61546 AGCTGTGGTG
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
22 1 0.03
23 33 0.92
24 2 0.06
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.32
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTATG
Found at i:69085 original size:2 final size:2
Alignment explanation
Indices: 69078--69109 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
69068 CCTTAAATTG
*
69078 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69110 GAAAGATTCG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:69415 original size:23 final size:23
Alignment explanation
Indices: 69389--69436 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
69379 ATAAAGTACA
*
69389 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
69412 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
69435 AT
1 AT
69437 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:69915 original size:23 final size:22
Alignment explanation
Indices: 69853--69924 Score: 99
Period size: 23 Copynumber: 3.2 Consensus size: 22
69843 ACACTTTACA
*
69853 ATATAACCACTACCTATTACATT
1 ATATAA-CGCTACCTATTACATT
*
69876 ATATAACGATACCTATTACATT
1 ATATAACGCTACCTATTACATT
*
69898 ATATAAGCGCTACCTATTACATC
1 ATATAA-CGCTACCTATTACATT
69921 ATAT
1 ATAT
69925 TTTTACCTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
22 20 0.45
23 24 0.55
ACGTcount: A:0.39, C:0.22, G:0.04, T:0.35
Consensus pattern (22 bp):
ATATAACGCTACCTATTACATT
Found at i:70311 original size:23 final size:23
Alignment explanation
Indices: 70285--70347 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
70275 ATATAACCAC
70285 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
70308 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
70331 TACCTATTACATCATAT
1 TACCTATTACATTATAT
70348 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:70567 original size:426 final size:427
Alignment explanation
Indices: 69503--70639 Score: 2101
Period size: 426 Copynumber: 2.7 Consensus size: 427
69493 TATTACATTA
69503 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATA-TTTCTTTTAAAGTTATGTAA
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTCTTTTAAAGTTATGTAA
69567 TTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
*
69632 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGGATTTTTAATTT
131 ATTTGCACAAAAAA-TATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
*
69697 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAAACGCCTATAATTACTAAATTAATAT
195 AATAAT-A-ATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
69762 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
258 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
69827 TTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAACGATACCTAT
323 TTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAACGATACCTAT
69892 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
388 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
69932 TA-TATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATAC-TTCTTTTAAAGTTATGTAA
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTCTTTTAAAGTTATGTAA
69995 TTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAA-TTC
66 TTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
*
70059 ATTTGCACAAAAATTATTTGATTG-TTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 ATTTGCACAAAAAATATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
70123 ATAATAATATATCGTAACGTAAAAAA-AAATCATTAGACGCCTATAATTACTAAATTAATATCTT
196 ATAATAATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTT
70187 AAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTT
261 AAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTT
70252 ATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTA
326 ATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATAT-AACGATACCTATTA
70317 CATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 CATTATATAAGCGCTACCTATTACATCATATTTTTACC
* *
70355 TATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTTAAAAGTTATGTA
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTCTTTT-AAAGTTATGTA
*
70420 ATTTATGTTTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAA-TTAATAATTT
65 ATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTT
*
70484 CATTTACACAAAAAATA-TTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
130 CATTTGCACAAAAAATATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
70548 AATAATAATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCT
195 AATAATAATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCT
*
70613 TAAAACTCACTCAAAGGATAACCTTAA
260 TAAAACTCACTCAAAAGATAACCTTAA
70640 GAACACTTGA
Statistics
Matches: 691, Mismatches: 9, Indels: 18
0.96 0.01 0.03
Matches are distributed among these distances:
422 152 0.22
423 74 0.11
424 42 0.06
425 64 0.09
426 157 0.23
427 79 0.11
428 121 0.18
429 2 0.00
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (427 bp):
TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTCTTTTAAAGTTATGTAA
TTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
ATTTGCACAAAAAATATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
ATAATAATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTT
AAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTT
ATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAACGATACCTATTAC
ATTATATAAGCGCTACCTATTACATCATATTTTTACC
Found at i:70800 original size:39 final size:38
Alignment explanation
Indices: 70746--70831 Score: 145
Period size: 39 Copynumber: 2.2 Consensus size: 38
70736 TCAAGTTGTA
* *
70746 GATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAG-CTTG
70785 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTG
70823 GATTTTGAT
1 GATTTTGAT
70832 GAGCATCGGA
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
38 12 0.27
39 33 0.73
ACGTcount: A:0.17, C:0.14, G:0.21, T:0.48
Consensus pattern (38 bp):
GATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTG
Found at i:71113 original size:18 final size:18
Alignment explanation
Indices: 71090--71126 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
71080 CGAAATATAT
71090 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
71108 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
71126 A
1 A
71127 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:71553 original size:25 final size:25
Alignment explanation
Indices: 71513--71563 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
71503 TTTTTCCAAA
* *
71513 TAATGTACTCATAACAATGTTCAAT
1 TAATGTACCCACAACAATGTTCAAT
*
71538 TAATGTACCCACAACAATGTTTAAT
1 TAATGTACCCACAACAATGTTCAAT
71563 T
1 T
71564 GATTTGTTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (25 bp):
TAATGTACCCACAACAATGTTCAAT
Found at i:71854 original size:21 final size:22
Alignment explanation
Indices: 71829--71880 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
71819 ACACTTTACA
*
71829 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
71852 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
71875 ATATAA
1 ATATAA
71881 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:71865 original size:23 final size:23
Alignment explanation
Indices: 71839--71901 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
71829 ATATAACCAC
71839 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
71862 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
71885 TACCTATTACATCATAT
1 TACCTATTACATTATAT
71902 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:72298 original size:25 final size:25
Alignment explanation
Indices: 72241--72306 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
72231 CACTCAAAAG
*
72241 ATGTATATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
***
72266 ACAAACATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
*
72291 TTGTACATACCTAAAT
1 ATGTACATACCTAAAT
72307 TTAATGATAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (25 bp):
ATGTACATACCTAAATATGTAGTTA
Found at i:75377 original size:181 final size:183
Alignment explanation
Indices: 74773--75479 Score: 1265
Period size: 183 Copynumber: 3.9 Consensus size: 183
74763 TTAAAATTAC
* *
74773 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
* *
74838 ATTATAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACTGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
* *
74903 ATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
131 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
*
74956 CGATACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
*
75021 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGTATAAAACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
*
75086 ATATTATAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
131 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
75139 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
75204 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATA-TT-TACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
75267 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
131 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
*
75320 CGACACTTTTTTAAATCGTATCGACATATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
75385 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
* * * **
75450 ATATTGCAAATTTACCTATTTTATTATAAT
131 ATATTACAAAATTATCTATTACATTATAAT
75480 ATGTTGAAAG
Statistics
Matches: 504, Mismatches: 18, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
181 177 0.35
182 4 0.01
183 323 0.64
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.36
Consensus pattern (183 bp):
CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
Found at i:75444 original size:364 final size:366
Alignment explanation
Indices: 74773--75454 Score: 1269
Period size: 364 Copynumber: 1.9 Consensus size: 366
74763 TTAAAATTAC
* *
74773 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
* *
74838 ATTATAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACTGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
* *
74903 ATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGTCGATACTTTTTT
131 ATATTACAAAATTATCTATTACATTATAAATATGGGTTCCGATGTGTAAATGTCGACACTTTTTT
74968 AAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGT
196 AAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGT
*
75033 CGATATAGGTTGTAGACCTATTCGCGTATAAAACCGGTATATTTATACCGGTTATATTATAAAAT
261 CGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTATAAAAT
75098 TATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
326 TATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
75139 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
75204 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATA-TT-TACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
*
75267 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTT
131 ATATTACAAAATTATCTATTACATTATAAATATGGGTTCCGATGTGTAAATGTCGACACTTTTTT
*
75332 AAATCGTATCGACATATTTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGT
196 AAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGT
75397 CGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATT
261 CGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATT
75455 GCAAATTTAC
Statistics
Matches: 307, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
364 190 0.62
365 2 0.01
366 115 0.37
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.35
Consensus pattern (366 bp):
CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
ATATTACAAAATTATCTATTACATTATAAATATGGGTTCCGATGTGTAAATGTCGACACTTTTTT
AAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGT
CGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTATAAAAT
TATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
Found at i:76910 original size:3 final size:3
Alignment explanation
Indices: 76902--76955 Score: 72
Period size: 3 Copynumber: 18.0 Consensus size: 3
76892 ACTTGTTTGG
* * *
76902 ATC ATC ATC TTC ATC ATC ATC ATC ATC ATC GTC ATC ATC ATC GTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
*
76950 TTC ATC
1 ATC ATC
76956 GTCAGCTTCA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.26, C:0.33, G:0.04, T:0.37
Consensus pattern (3 bp):
ATC
Found at i:76919 original size:12 final size:12
Alignment explanation
Indices: 76902--76959 Score: 80
Period size: 12 Copynumber: 4.8 Consensus size: 12
76892 ACTTGTTTGG
* *
76902 ATCATCATCTTC
1 ATCATCGTCATC
*
76914 ATCATCATCATC
1 ATCATCGTCATC
76926 ATCATCGTCATC
1 ATCATCGTCATC
76938 ATCATCGTCATC
1 ATCATCGTCATC
*
76950 TTCATCGTCA
1 ATCATCGTCA
76960 GCTTCATCTT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 43 1.00
ACGTcount: A:0.26, C:0.33, G:0.05, T:0.36
Consensus pattern (12 bp):
ATCATCGTCATC
Found at i:76925 original size:18 final size:18
Alignment explanation
Indices: 76902--76970 Score: 75
Period size: 18 Copynumber: 3.8 Consensus size: 18
76892 ACTTGTTTGG
* *
76902 ATCATCATCTTCATCATC
1 ATCATCATCATCTTCATC
*
76920 ATCATCATCATCGTCATC
1 ATCATCATCATCTTCATC
*
76938 ATCATCGTCATCTTCATC
1 ATCATCATCATCTTCATC
* * *
76956 GTCAGCTTCATCTTC
1 ATCATCATCATCTTC
76971 TGCGACCGCT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.23, C:0.33, G:0.06, T:0.38
Consensus pattern (18 bp):
ATCATCATCATCTTCATC
Found at i:76964 original size:12 final size:12
Alignment explanation
Indices: 76915--76967 Score: 70
Period size: 12 Copynumber: 4.4 Consensus size: 12
76905 ATCATCTTCA
* *
76915 TCATCATCATCA
1 TCATCGTCATCT
*
76927 TCATCGTCATCA
1 TCATCGTCATCT
76939 TCATCGTCATCT
1 TCATCGTCATCT
*
76951 TCATCGTCAGCT
1 TCATCGTCATCT
76963 TCATC
1 TCATC
76968 TTCTGCGACC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.23, C:0.34, G:0.08, T:0.36
Consensus pattern (12 bp):
TCATCGTCATCT
Found at i:79290 original size:194 final size:198
Alignment explanation
Indices: 78426--79766 Score: 2419
Period size: 195 Copynumber: 6.9 Consensus size: 198
78416 TTTAAATTAG
78426 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
78491 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGA-TTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
78555 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
78620 AAA
196 AAA
78623 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATA-TCTCTCAT-AAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
78686 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
78751 CGACAC-TTTTATATATGGATCGACAC-TTAT-GG-GCACCCTGTTTTCCATTCATTCTGG-AAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
78811 AAA
196 AAA
78814 TATCGACACAAAC--TATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
78877 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
78942 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTG-TTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
79006 AAA
196 AAA
79009 TATCGACACAAAC--TATTAGTGTCGACACATTATTTATACATA-TCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
79071 ATTGTACCGGTTAGATTGAAAAATTACATATTA-ATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
79135 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTG-TTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
79199 AAA
196 AAA
* ***
79202 TATCGACACAAACTATATTAGTGTCGACACA-TATTTAGACATATTCTCTCATAAAATAAGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
79266 ATTGTACCGGTTAGATTG-AAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
79330 CGACAC-TTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
79394 CAAA
196 -AAA
*
79398 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAAACCGGTAT
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCAT-AAAACCGGTAT
79463 AATTGTACCGGTTAGATTGAAAAATTACATA-TACATTATACTTTTGGGTTCGATGA-TTTGGGA
65 AATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
79526 TCGACAC-TTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAA
130 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAA
79590 AAAA
195 AAAA
*
79594 TATCGACACAAACTATATTA--GTCGACA-ATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
79656 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
79721 CGACACTTTTTTATATATGGATCGACAC-TTATGGGTGCACCCTGTT
131 CGACAC-TTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
79767 GGCCATATTG
Statistics
Matches: 1116, Mismatches: 7, Indels: 44
0.96 0.01 0.04
Matches are distributed among these distances:
189 29 0.03
190 8 0.01
191 101 0.09
192 87 0.08
193 165 0.15
194 158 0.14
195 269 0.24
196 99 0.09
197 137 0.12
198 52 0.05
199 11 0.01
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.36
Consensus pattern (198 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
AAA
Found at i:79929 original size:19 final size:19
Alignment explanation
Indices: 79883--79931 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
79873 TTATATTCAC
*
79883 ATACAAAAATATAAATCGT
1 ATACAAAATTATAAATCGT
*
79902 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
79921 ATACAAAATTA
1 ATACAAAATTA
79932 ACCTACATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:81746 original size:32 final size:32
Alignment explanation
Indices: 81710--81773 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
81700 CATCTTAATA
* *
81710 TCACCCCTTAAACCCCAACTTCTTTCACCACT
1 TCACCCCTCAAACCCCAACTTCATTCACCACT
* *
81742 TCACCCCTCAAACCTCTACTTCATTCACCACT
1 TCACCCCTCAAACCCCAACTTCATTCACCACT
81774 CCATCTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.25, C:0.47, G:0.00, T:0.28
Consensus pattern (32 bp):
TCACCCCTCAAACCCCAACTTCATTCACCACT
Found at i:84116 original size:19 final size:19
Alignment explanation
Indices: 84072--84116 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
84062 TCCGGTATCA
84072 TTTACCGGTTTTATCATTT
1 TTTACCGGTTTTATCATTT
*
84091 TGATACCGG-TTTATCATATT
1 T-TTACCGGTTTTATCAT-TT
84111 TTTACC
1 TTTACC
84117 TGTTATATCG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.20, C:0.18, G:0.11, T:0.51
Consensus pattern (19 bp):
TTTACCGGTTTTATCATTT
Found at i:84278 original size:18 final size:18
Alignment explanation
Indices: 84237--84279 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 18
84227 CACTTTTAAA
84237 TTTACCGGTTTTATCATT
1 TTTACCGGTTTTATCATT
84255 TGTTACCGG-TTTATCATAT
1 T-TTACCGGTTTTATCAT-T
84274 TTTACC
1 TTTACC
84280 TGGTATATCG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 14 0.61
19 9 0.39
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.51
Consensus pattern (18 bp):
TTTACCGGTTTTATCATT
Done.