Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002106.1 Hibiscus syriacus cultivar Beakdansim tig00004309_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106780
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Found at i:17867 original size:20 final size:20
Alignment explanation
Indices: 17844--17935 Score: 114
Period size: 20 Copynumber: 4.6 Consensus size: 20
17834 GTTTCCAGAT
*
17844 TCGCAACGCGATTTTGACTA
1 TCGCAACGCGATTCTGACTA
* * * *
17864 TCGCAATGCGAATATGTA-AA
1 TCGCAACGCGATTCTG-ACTA
17884 TCGCAACGCGATTCTGACTA
1 TCGCAACGCGATTCTGACTA
17904 TCGCAACGCGATTCTGACTA
1 TCGCAACGCGATTCTGACTA
*
17924 TCCCAACGCGAT
1 TCGCAACGCGAT
17936 AATACAAAAT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
19 1 0.02
20 59 0.97
21 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (20 bp):
TCGCAACGCGATTCTGACTA
Found at i:18126 original size:22 final size:22
Alignment explanation
Indices: 18101--18151 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
18091 CTACAGTGAC
*
18101 ATCCGTCCCCATCTCCGACGAA
1 ATCCATCCCCATCTCCGACGAA
*
18123 ATCCATCCCCATCTCCGGCGAA
1 ATCCATCCCCATCTCCGACGAA
18145 ATCCATC
1 ATCCATC
18152 TATCTCCATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.24, C:0.45, G:0.12, T:0.20
Consensus pattern (22 bp):
ATCCATCCCCATCTCCGACGAA
Found at i:18560 original size:20 final size:20
Alignment explanation
Indices: 18537--18606 Score: 131
Period size: 20 Copynumber: 3.5 Consensus size: 20
18527 GATAGTTTAA
*
18537 TTCGCGTTGCGATAGTCATT
1 TTCGTGTTGCGATAGTCATT
18557 TTCGTGTTGCGATAGTCATT
1 TTCGTGTTGCGATAGTCATT
18577 TTCGTGTTGCGATAGTCATT
1 TTCGTGTTGCGATAGTCATT
18597 TTCGTGTTGC
1 TTCGTGTTGC
18607 TTTTAAGTTT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.13, C:0.17, G:0.26, T:0.44
Consensus pattern (20 bp):
TTCGTGTTGCGATAGTCATT
Found at i:20073 original size:24 final size:27
Alignment explanation
Indices: 20020--20073 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
20010 CATCACCTAT
20020 TCCGTCACATCATCGAGCCTCTTCTCC
1 TCCGTCACATCATCGAGCCTCTTCTCC
20047 TCCGTCACATCATCGAGCCTCTTCTCC
1 TCCGTCACATCATCGAGCCTCTTCTCC
20074 ACCATCACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.15, C:0.44, G:0.11, T:0.30
Consensus pattern (27 bp):
TCCGTCACATCATCGAGCCTCTTCTCC
Found at i:20081 original size:27 final size:27
Alignment explanation
Indices: 20024--20086 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
20014 ACCTATTCCG
* *
20024 TCACATCATCGAGCCTCTTCTCCTCCG
1 TCACATCATCGAGCCTCTTCTCCACCA
20051 TCACATCATCGAGCCTCTTCTCCACCA
1 TCACATCATCGAGCCTCTTCTCCACCA
*
20078 TCACCTCAT
1 TCACATCAT
20087 GATAGGCGAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.19, C:0.44, G:0.08, T:0.29
Consensus pattern (27 bp):
TCACATCATCGAGCCTCTTCTCCACCA
Found at i:20668 original size:19 final size:19
Alignment explanation
Indices: 20646--20708 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
20636 CTATCGCAAC
*
20646 GCGAATTTAGTTTCGCGTT
1 GCGATTTTAGTTTCGCGTT
* *
20665 GCGATTTTGGTTTTGCGTT
1 GCGATTTTAGTTTCGCGTT
*
20684 GCGATTTTTA-TTTCGCATT
1 GCGA-TTTTAGTTTCGCGTT
20703 GCGATT
1 GCGATT
20709 ATCCAGTTGC
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
18 2 0.05
19 31 0.84
20 4 0.11
ACGTcount: A:0.13, C:0.14, G:0.25, T:0.48
Consensus pattern (19 bp):
GCGATTTTAGTTTCGCGTT
Found at i:20739 original size:20 final size:20
Alignment explanation
Indices: 20710--20761 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
20700 ATTGCGATTA
20710 TCCA-GTTGCGATAGTCATT
1 TCCACGTTGCGATAGTCATT
20729 TCCACGTTGCGATAGTCATT
1 TCCACGTTGCGATAGTCATT
* *
20749 TTCGCGTTGCGAT
1 TCCACGTTGCGAT
20762 TTAAGTTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 4 0.13
20 26 0.87
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (20 bp):
TCCACGTTGCGATAGTCATT
Found at i:20770 original size:20 final size:20
Alignment explanation
Indices: 20747--20789 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
20737 GCGATAGTCA
20747 TTTTCGCGTTGCGA-TTTAAG
1 TTTT-GCGTTGCGATTTTAAG
*
20767 TTTTGTGTTGCGATTTTAAG
1 TTTTGCGTTGCGATTTTAAG
20787 TTT
1 TTT
20790 CAGAAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.14, C:0.09, G:0.23, T:0.53
Consensus pattern (20 bp):
TTTTGCGTTGCGATTTTAAG
Found at i:21343 original size:42 final size:42
Alignment explanation
Indices: 21297--21390 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 42
21287 CCTTTCCTAT
21297 CGTTCAAGAGGCCCCTATAATCCCTCAAGA-GTCCCCTCCCAC
1 CGTTCAAGAGGCCCCTATAATCCCTCAAGAGGT-CCCTCCCAC
* * ** *
21339 CGTTCAAGAGGCCCCTGTCATCGTTGAAGAGGTCCCTCCCAC
1 CGTTCAAGAGGCCCCTATAATCCCTCAAGAGGTCCCTCCCAC
*
21381 CATTCAAGAG
1 CGTTCAAGAG
21391 CCCGATTCAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 43 0.96
43 2 0.04
ACGTcount: A:0.23, C:0.37, G:0.19, T:0.20
Consensus pattern (42 bp):
CGTTCAAGAGGCCCCTATAATCCCTCAAGAGGTCCCTCCCAC
Found at i:21345 original size:21 final size:21
Alignment explanation
Indices: 21321--21390 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
21311 CTATAATCCC
21321 TCAAGAGTCCCCTCCCACCGT
1 TCAAGAGTCCCCTCCCACCGT
* ** *
21342 TCAAGAGGCCCCTGTCATCGT
1 TCAAGAGTCCCCTCCCACCGT
* *
21363 TGAAGAGGT-CCCTCCCACCAT
1 TCAAGA-GTCCCCTCCCACCGT
21384 TCAAGAG
1 TCAAGAG
21391 CCCGATTCAT
Statistics
Matches: 37, Mismatches: 11, Indels: 3
0.73 0.22 0.06
Matches are distributed among these distances:
20 1 0.03
21 35 0.95
22 1 0.03
ACGTcount: A:0.23, C:0.37, G:0.20, T:0.20
Consensus pattern (21 bp):
TCAAGAGTCCCCTCCCACCGT
Found at i:22795 original size:14 final size:14
Alignment explanation
Indices: 22776--22812 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
22766 GCTTGTTTAA
22776 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
22790 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
22804 TTGATTTGT
1 TTGATTTGT
22813 TTAATTGATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.49
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:22853 original size:36 final size:35
Alignment explanation
Indices: 22812--22920 Score: 117
Period size: 36 Copynumber: 3.3 Consensus size: 35
22802 AGTTGATTTG
22812 TTTAATTGATGTGTAAATAATTCTTATTTGTGATTA
1 TTTAATTGATGTGTAAATAATTCTTATTTGTG-TTA
* * *
22848 TTTAATTGATTTGT-AA-AAGT-TGA-TT-TG---
1 TTTAATTGATGTGTAAATAATTCTTATTTGTGTTA
22875 TTTAATTGATGTGTAAATAATTCTTATTTGTGCTTA
1 TTTAATTGATGTGTAAATAATTCTTATTTGTG-TTA
22911 TTTAATTGAT
1 TTTAATTGAT
22921 TGAAATGTAA
Statistics
Matches: 58, Mismatches: 6, Indels: 18
0.71 0.07 0.22
Matches are distributed among these distances:
27 13 0.22
28 2 0.03
29 3 0.05
30 2 0.03
31 4 0.07
32 4 0.07
33 2 0.03
34 3 0.05
35 2 0.03
36 23 0.40
ACGTcount: A:0.29, C:0.03, G:0.15, T:0.53
Consensus pattern (35 bp):
TTTAATTGATGTGTAAATAATTCTTATTTGTGTTA
Found at i:22889 original size:63 final size:63
Alignment explanation
Indices: 22790--22943 Score: 263
Period size: 63 Copynumber: 2.4 Consensus size: 63
22780 TTTGTAAAAG
22790 TTGATTTGTAAAAGTTGATTTGTTTAATTGATGTGTAAATAATTCTTATTTGTGATTATTTAA
1 TTGATTTGTAAAAGTTGATTTGTTTAATTGATGTGTAAATAATTCTTATTTGTGATTATTTAA
*
22853 TTGATTTGTAAAAGTTGATTTGTTTAATTGATGTGTAAATAATTCTTATTTGTGCTTATTTAA
1 TTGATTTGTAAAAGTTGATTTGTTTAATTGATGTGTAAATAATTCTTATTTGTGATTATTTAA
22916 TTGATTGAAATGTAAAAGTTGATTTGTT
1 TTGATT----TGTAAAAGTTGATTTGTT
22944 GATTTCAATA
Statistics
Matches: 86, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
63 68 0.79
67 18 0.21
ACGTcount: A:0.30, C:0.02, G:0.17, T:0.51
Consensus pattern (63 bp):
TTGATTTGTAAAAGTTGATTTGTTTAATTGATGTGTAAATAATTCTTATTTGTGATTATTTAA
Found at i:23020 original size:20 final size:20
Alignment explanation
Indices: 22995--23087 Score: 116
Period size: 20 Copynumber: 4.7 Consensus size: 20
22985 AGGTACACTT
* *
22995 TCGCAACGCTAAACTCAAAA
1 TCGCAATGCGAAACTCAAAA
*
23015 TCGCAATGCGAAAGTCAAAA
1 TCGCAATGCGAAACTCAAAA
*
23035 TCGCAATGCGAAAGTCAAAA
1 TCGCAATGCGAAACTCAAAA
*
23055 TCGTAATGCGAAAGC-CAAAA
1 TCGCAATGCGAAA-CTCAAAA
*
23075 TCGCAACGCGAAA
1 TCGCAATGCGAAA
23088 GTTAATTCGC
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
20 65 1.00
ACGTcount: A:0.44, C:0.24, G:0.18, T:0.14
Consensus pattern (20 bp):
TCGCAATGCGAAACTCAAAA
Found at i:23088 original size:20 final size:20
Alignment explanation
Indices: 23010--23088 Score: 122
Period size: 20 Copynumber: 4.0 Consensus size: 20
23000 ACGCTAAACT
*
23010 CAAAATCGCAATGCGAAAGT
1 CAAAATCGCAATGCGAAAGC
*
23030 CAAAATCGCAATGCGAAAGT
1 CAAAATCGCAATGCGAAAGC
*
23050 CAAAATCGTAATGCGAAAGC
1 CAAAATCGCAATGCGAAAGC
*
23070 CAAAATCGCAACGCGAAAG
1 CAAAATCGCAATGCGAAAG
23089 TTAATTCGCA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.46, C:0.22, G:0.20, T:0.13
Consensus pattern (20 bp):
CAAAATCGCAATGCGAAAGC
Found at i:23088 original size:40 final size:40
Alignment explanation
Indices: 22995--23089 Score: 145
Period size: 40 Copynumber: 2.4 Consensus size: 40
22985 AGGTACACTT
* * *
22995 TCGCAACGCTAAACTCAAAATCGCAATGCGAAAGTCAAAA
1 TCGCAACGCGAAAGTCAAAATCGCAATGCGAAAGCCAAAA
* *
23035 TCGCAATGCGAAAGTCAAAATCGTAATGCGAAAGCCAAAA
1 TCGCAACGCGAAAGTCAAAATCGCAATGCGAAAGCCAAAA
23075 TCGCAACGCGAAAGT
1 TCGCAACGCGAAAGT
23090 TAATTCGCAT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.43, C:0.23, G:0.19, T:0.15
Consensus pattern (40 bp):
TCGCAACGCGAAAGTCAAAATCGCAATGCGAAAGCCAAAA
Found at i:23156 original size:20 final size:20
Alignment explanation
Indices: 23131--23267 Score: 184
Period size: 20 Copynumber: 6.8 Consensus size: 20
23121 ACGATTTTCT
*
23131 CGTTGCGATAGTCAAATTCC
1 CGTTGCGATAGTCAAATTCG
* *
23151 CGTTGCGATAATCAAATTCA
1 CGTTGCGATAGTCAAATTCG
*
23171 CGTTGCGATAGTCAAATTTG
1 CGTTGCGATAGTCAAATTCG
**
23191 CACTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
23211 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
* *
23231 TGTTACGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
* *
23251 CATTGCGATATTCAAAT
1 CGTTGCGATAGTCAAAT
23268 GAATGTGTAA
Statistics
Matches: 101, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 101 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (20 bp):
CGTTGCGATAGTCAAATTCG
Found at i:23490 original size:140 final size:140
Alignment explanation
Indices: 23238--23660 Score: 774
Period size: 140 Copynumber: 3.0 Consensus size: 140
23228 TCGTGTTACG
* *
23238 ATAGTCAAATTCGCATTGCGATATTCAAATGAATGTGTAATAATTGATAACAACTGAACAGATCA
1 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAATGATAACAACTGAACAGATCA
23303 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
66 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
23368 AATACACATA
131 AATACACATA
*
23378 ATAGTCAAATTCGCGTTGTGATATTCAAATGAATGTGTAATAAATGATAACAACTGAACAGATCA
1 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAATGATAACAACTGAACAGATCA
23443 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
66 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
*
23508 AATACACAAA
131 AATACACATA
* *
23518 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACATATCA
1 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAATGATAACAACTGAACAGATCA
*
23583 TAGCAATGTTCAAACTCAAGTTACTAATATATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
66 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
*
23648 AATAGACATA
131 AATACACATA
23658 ATA
1 ATA
23661 CAACGTTTGC
Statistics
Matches: 273, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
140 273 1.00
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.29
Consensus pattern (140 bp):
ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAATGATAACAACTGAACAGATCA
TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
AATACACATA
Found at i:25807 original size:14 final size:14
Alignment explanation
Indices: 25788--25814 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25778 TCCCATGGCA
25788 TTTTCTTCGGGGAC
1 TTTTCTTCGGGGAC
25802 TTTTCTTCGGGGA
1 TTTTCTTCGGGGA
25815 TTTCTTATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.19, G:0.30, T:0.44
Consensus pattern (14 bp):
TTTTCTTCGGGGAC
Found at i:26053 original size:24 final size:24
Alignment explanation
Indices: 26026--26072 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
26016 CAAAATCCGA
26026 GTATTGACCAAGATCAAAGTTCGG
1 GTATTGACCAAGATCAAAGTTCGG
*
26050 GTATTGACCAAGATCAAATTTCG
1 GTATTGACCAAGATCAAAGTTCG
26073 AATACCGACT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (24 bp):
GTATTGACCAAGATCAAAGTTCGG
Found at i:26911 original size:20 final size:20
Alignment explanation
Indices: 26886--26996 Score: 100
Period size: 20 Copynumber: 5.5 Consensus size: 20
26876 TTGAAATTCA
*
26886 GCGTTGCGACGGTCAGAATC
1 GCGTTGCGACAGTCAGAATC
* **
26906 GCGTTGCGATTATGT-ATTATC
1 GCGTTGCGA-CA-GTCAGAATC
26927 GCGTTGCGACAGTCAGAATC
1 GCGTTGCGACAGTCAGAATC
* **
26947 GCGTTGCGATTATGT-ATTATC
1 GCGTTGCGA-CA-GTCAGAATC
26968 GCGTTGCGACAGTCAGAATC
1 GCGTTGCGACAGTCAGAATC
*
26988 ACGTTGCGA
1 GCGTTGCGA
26997 TTATGTATTA
Statistics
Matches: 71, Mismatches: 14, Indels: 12
0.73 0.14 0.12
Matches are distributed among these distances:
19 4 0.06
20 36 0.51
21 27 0.38
22 4 0.06
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (20 bp):
GCGTTGCGACAGTCAGAATC
Found at i:26914 original size:41 final size:41
Alignment explanation
Indices: 26886--27035 Score: 255
Period size: 41 Copynumber: 3.7 Consensus size: 41
26876 TTGAAATTCA
*
26886 GCGTTGCGACGGTCAGAATCGCGTTGCGATTATGTATTATC
1 GCGTTGCGACAGTCAGAATCGCGTTGCGATTATGTATTATC
26927 GCGTTGCGACAGTCAGAATCGCGTTGCGATTATGTATTATC
1 GCGTTGCGACAGTCAGAATCGCGTTGCGATTATGTATTATC
*
26968 GCGTTGCGACAGTCAGAATCACGTTGCGATTATGTATTATC
1 GCGTTGCGACAGTCAGAATCGCGTTGCGATTATGTATTATC
* * *
27009 ACGTTGCGATAGTCAGAATCGCATTGC
1 GCGTTGCGACAGTCAGAATCGCGTTGC
27036 AAATCTGGAA
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 103 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (41 bp):
GCGTTGCGACAGTCAGAATCGCGTTGCGATTATGTATTATC
Found at i:26929 original size:21 final size:21
Alignment explanation
Indices: 26903--27018 Score: 114
Period size: 21 Copynumber: 5.6 Consensus size: 21
26893 GACGGTCAGA
26903 ATCGCGTTGCGATTATGTATT
1 ATCGCGTTGCGATTATGTATT
* **
26924 ATCGCGTTGCGA-CA-GTCAGA
1 ATCGCGTTGCGATTATGT-ATT
26944 ATCGCGTTGCGATTATGTATT
1 ATCGCGTTGCGATTATGTATT
* **
26965 ATCGCGTTGCGA-CA-GTCAGA
1 ATCGCGTTGCGATTATGT-ATT
*
26985 ATCACGTTGCGATTATGTATT
1 ATCGCGTTGCGATTATGTATT
*
27006 ATCACGTTGCGAT
1 ATCGCGTTGCGAT
27019 AGTCAGAATC
Statistics
Matches: 76, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
19 4 0.05
20 27 0.36
21 41 0.54
22 4 0.05
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (21 bp):
ATCGCGTTGCGATTATGTATT
Found at i:27075 original size:20 final size:19
Alignment explanation
Indices: 27052--27097 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
27042 GGAAACTGAT
* *
27052 TTGCGATACTGGAGATCGCG
1 TTGCGAT-CTAGAGATCGCA
*
27072 TTGCGATTTAGAGATCGCA
1 TTGCGATCTAGAGATCGCA
27091 TTGCGAT
1 TTGCGAT
27098 TTTGTTGGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (19 bp):
TTGCGATCTAGAGATCGCA
Found at i:27087 original size:19 final size:19
Alignment explanation
Indices: 27063--27099 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
27053 TGCGATACTG
*
27063 GAGATCGCGTTGCGATTTA
1 GAGATCGCATTGCGATTTA
27082 GAGATCGCATTGCGATTT
1 GAGATCGCATTGCGATTT
27100 TGTTGGTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (19 bp):
GAGATCGCATTGCGATTTA
Found at i:27692 original size:14 final size:15
Alignment explanation
Indices: 27673--27706 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
27663 TTTAAGAATG
27673 ATTTAAATTTA-TAA
1 ATTTAAATTTAGTAA
27687 ATTTAAATTTAGTAA
1 ATTTAAATTTAGTAA
27702 ATTTA
1 ATTTA
27707 TAAAATAGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (15 bp):
ATTTAAATTTAGTAA
Found at i:34782 original size:20 final size:20
Alignment explanation
Indices: 34757--34830 Score: 103
Period size: 20 Copynumber: 3.7 Consensus size: 20
34747 TTTATTTCAA
* *
34757 GAAAATCAAATTCGCAATTC
1 GAAAATAAAATTCGCAACTC
*
34777 GAAAATTAAATTCGCAACTC
1 GAAAATAAAATTCGCAACTC
*
34797 GAAAATAAAAATCGCAACTC
1 GAAAATAAAATTCGCAACTC
*
34817 GAAAATGAAATTCG
1 GAAAATAAAATTCG
34831 AGTTGTGAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.49, C:0.18, G:0.12, T:0.22
Consensus pattern (20 bp):
GAAAATAAAATTCGCAACTC
Found at i:34849 original size:20 final size:20
Alignment explanation
Indices: 34824--34882 Score: 82
Period size: 20 Copynumber: 3.0 Consensus size: 20
34814 CTCGAAAATG
*
34824 AAATTCGAGTTGTGAATTTA
1 AAATTCGAGTTGCGAATTTA
*
34844 AAATTCGAGTTGCGAATTTT
1 AAATTCGAGTTGCGAATTTA
**
34864 ATTTTCGAGTTGCGAATTT
1 AAATTCGAGTTGCGAATTT
34883 GATTCATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.42
Consensus pattern (20 bp):
AAATTCGAGTTGCGAATTTA
Found at i:35195 original size:18 final size:18
Alignment explanation
Indices: 35169--35209 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
35159 AGGTGAAGGC
*
35169 GATTGTGATTGAGATTTT
1 GATTTTGATTGAGATTTT
*
35187 GATTTTGATTGCGATTTT
1 GATTTTGATTGAGATTTT
35205 GATTT
1 GATTT
35210 CCCTTTACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.20, C:0.02, G:0.24, T:0.54
Consensus pattern (18 bp):
GATTTTGATTGAGATTTT
Found at i:35588 original size:12 final size:12
Alignment explanation
Indices: 35571--35600 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
35561 GTTTAGATGA
35571 ATAACAACTTTT
1 ATAACAACTTTT
35583 ATAACAACTTTT
1 ATAACAACTTTT
35595 ATAACA
1 ATAACA
35601 TGACCACATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.37
Consensus pattern (12 bp):
ATAACAACTTTT
Found at i:36664 original size:20 final size:20
Alignment explanation
Indices: 36639--36683 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
36629 TCTAAGAGCT
36639 CATTTAGGACCACATAGATG
1 CATTTAGGACCACATAGATG
* * *
36659 CATTTAGGAGCATATAGTTG
1 CATTTAGGACCACATAGATG
36679 CATTT
1 CATTT
36684 GGTGGAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (20 bp):
CATTTAGGACCACATAGATG
Found at i:45193 original size:20 final size:20
Alignment explanation
Indices: 45168--45210 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
45158 TTTAAGAGCT
45168 CATTTAGGACCACATAGATG
1 CATTTAGGACCACATAGATG
* * *
45188 CATTTAGGAGCATATAGTTG
1 CATTTAGGACCACATAGATG
45208 CAT
1 CAT
45211 GTGGTGGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (20 bp):
CATTTAGGACCACATAGATG
Found at i:46380 original size:21 final size:21
Alignment explanation
Indices: 46354--46396 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
46344 TTTTCGGGCT
* *
46354 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCATTCA
*
46375 AGGGGAACCGATACCCCTTCA
1 AGGGGAACCGATACCCATTCA
46396 A
1 A
46397 CGAAATGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAACCGATACCCATTCA
Found at i:46511 original size:66 final size:65
Alignment explanation
Indices: 46376--46510 Score: 175
Period size: 65 Copynumber: 2.1 Consensus size: 65
46366 ACCCATTCAA
* * * *
46376 GGGGAACCGATACCCCTTCAACGAAATGAATTTCCAGAATGCAAGAGGGGAATCGATACCCCCAG
1 GGGGGACCGATACCCCCTCAACGAAATGAAATTCCAGAATGCAAGAGGGGAACCGATACCCCCAG
* * *
46441 GGGGGACCGATACCCCCTCATCGTATAA-GAAATTCCAGAATGCTATAGGGGAACCGATA-CCCC
1 GGGGGACCGATACCCCCTCAACG-A-AATGAAATTCCAGAATGCAAGAGGGGAACCGATACCCCC
46504 AG
64 AG
46506 GGGGG
1 GGGGG
46511 GGAACCGATT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
65 31 0.51
66 28 0.46
67 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.27, T:0.16
Consensus pattern (65 bp):
GGGGGACCGATACCCCCTCAACGAAATGAAATTCCAGAATGCAAGAGGGGAACCGATACCCCCAG
Found at i:46870 original size:29 final size:29
Alignment explanation
Indices: 46828--46897 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
46818 CATATTATGA
**
46828 TACATGACATGAATTTGTATTAAATGTAT
1 TACATGACATGAATTCATATTAAATGTAT
*
46857 TACATGACATGAATTCATATTATATGTAT
1 TACATGACATGAATTCATATTAAATGTAT
46886 TACATGACATGA
1 TACATGACATGA
46898 TTATGCAGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.39
Consensus pattern (29 bp):
TACATGACATGAATTCATATTAAATGTAT
Found at i:46955 original size:30 final size:31
Alignment explanation
Indices: 46913--46972 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 31
46903 CAGAAAAGTT
46913 ATATGCACTATGTGATAAAGGTATGGAAATG
1 ATATGCACTATGTGATAAAGGTATGGAAATG
*
46944 ATATGC-CTATGTGTTAAAGGTATGGAAAT
1 ATATGCACTATGTGATAAAGGTATGGAAAT
46973 ACTATGTCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 22 0.79
31 6 0.21
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (31 bp):
ATATGCACTATGTGATAAAGGTATGGAAATG
Found at i:47266 original size:22 final size:22
Alignment explanation
Indices: 47192--47258 Score: 134
Period size: 22 Copynumber: 3.0 Consensus size: 22
47182 TTATGGACAT
47192 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
47214 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
47236 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
47258 A
1 A
47259 TTTATACGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (22 bp):
AATTCTACGGGCACTTCGGTGC
Found at i:53315 original size:21 final size:21
Alignment explanation
Indices: 53289--53331 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
53279 TTTTCGGGCT
* *
53289 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCATTCA
*
53310 AGGGGAACCGATACCCCTTCA
1 AGGGGAACCGATACCCATTCA
53331 A
1 A
53332 CGAAATGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAACCGATACCCATTCA
Found at i:53446 original size:66 final size:67
Alignment explanation
Indices: 53311--53461 Score: 182
Period size: 67 Copynumber: 2.3 Consensus size: 67
53301 ACCCATTCAA
* * * *
53311 GGGGAACCGATACCCCTTCAACGAAATGAATTTCCAGAATGCAAGAGGGGAATCGATACCCCCA-
1 GGGGGACCGATACCCCCTCAACGAAATGAAATTCCAGAATGCAAGAGGGGAACCGATACCCCCAG
53375 GG
66 GG
* * *
53377 GGGGGACCGATACCCCCTCATCGTATAA-GAAATTCCAGAATGCTATAGGGGAACCGATA-CCCC
1 GGGGGACCGATACCCCCTCAACG-A-AATGAAATTCCAGAATGCAAGAGGGGAACCGATACCCCC
53440 AGGG
64 AGGG
*
53444 GGGGGAACCGATTCCCCC
1 GGGGG-ACCGATACCCCC
53462 ATGAGAAAAA
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
66 25 0.34
67 35 0.48
68 13 0.18
ACGTcount: A:0.30, C:0.28, G:0.27, T:0.15
Consensus pattern (67 bp):
GGGGGACCGATACCCCCTCAACGAAATGAAATTCCAGAATGCAAGAGGGGAACCGATACCCCCAG
GG
Found at i:53803 original size:29 final size:29
Alignment explanation
Indices: 53761--53830 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
53751 CATATTATGA
**
53761 TACATGACATGAATTTGTATTAAATGTAT
1 TACATGACATGAATTCATATTAAATGTAT
*
53790 TACATGACATGAATTCATATTATATGTAT
1 TACATGACATGAATTCATATTAAATGTAT
53819 TACATGACATGA
1 TACATGACATGA
53831 TATGCAGAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.39
Consensus pattern (29 bp):
TACATGACATGAATTCATATTAAATGTAT
Found at i:53887 original size:30 final size:31
Alignment explanation
Indices: 53845--53904 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 31
53835 CAGAAAAGTT
53845 ATATGCACTATGTGATAAAGGTATGGAAATG
1 ATATGCACTATGTGATAAAGGTATGGAAATG
*
53876 ATATGC-CTATGTGTTAAAGGTATGGAAAT
1 ATATGCACTATGTGATAAAGGTATGGAAAT
53905 ACTATGTCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 22 0.79
31 6 0.21
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (31 bp):
ATATGCACTATGTGATAAAGGTATGGAAATG
Found at i:54198 original size:22 final size:22
Alignment explanation
Indices: 54124--54190 Score: 134
Period size: 22 Copynumber: 3.0 Consensus size: 22
54114 TTATGGACAT
54124 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
54146 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
54168 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
54190 A
1 A
54191 TTTATACGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (22 bp):
AATTCTACGGGCACTTCGGTGC
Found at i:60250 original size:21 final size:21
Alignment explanation
Indices: 60224--60266 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
60214 TTTTCGGGCT
* *
60224 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCATTCA
*
60245 AGGGGAACCGATACCCCTTCA
1 AGGGGAACCGATACCCATTCA
60266 A
1 A
60267 CGAAATGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAACCGATACCCATTCA
Found at i:60381 original size:66 final size:67
Alignment explanation
Indices: 60246--60396 Score: 182
Period size: 67 Copynumber: 2.3 Consensus size: 67
60236 ACCCATTCAA
* * * *
60246 GGGGAACCGATACCCCTTCAACGAAATGAATTTCCAGAATGCAAGAGGGGAATCGATACCCCCA-
1 GGGGGACCGATACCCCCTCAACGAAATGAAATTCCAGAATGCAAGAGGGGAACCGATACCCCCAG
60310 GG
66 GG
* * *
60312 GGGGGACCGATACCCCCTCATCGTATAA-GAAATTCCAGAATGCTATAGGGGAACCGATA-CCCC
1 GGGGGACCGATACCCCCTCAACG-A-AATGAAATTCCAGAATGCAAGAGGGGAACCGATACCCCC
60375 AGGG
64 AGGG
*
60379 GGGGGAACCGATTCCCCC
1 GGGGG-ACCGATACCCCC
60397 ATGAGAAAAA
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
66 25 0.34
67 35 0.48
68 13 0.18
ACGTcount: A:0.30, C:0.28, G:0.27, T:0.15
Consensus pattern (67 bp):
GGGGGACCGATACCCCCTCAACGAAATGAAATTCCAGAATGCAAGAGGGGAACCGATACCCCCAG
GG
Found at i:60741 original size:29 final size:29
Alignment explanation
Indices: 60699--60768 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
60689 CATATTATGA
**
60699 TACATGACATGAATTTGTATTAAATGTAT
1 TACATGACATGAATTCATATTAAATGTAT
*
60728 TACATGACATGAATTCATATTATATGTAT
1 TACATGACATGAATTCATATTAAATGTAT
60757 TACATGACATGA
1 TACATGACATGA
60769 TTATGCAGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.39
Consensus pattern (29 bp):
TACATGACATGAATTCATATTAAATGTAT
Found at i:60826 original size:30 final size:31
Alignment explanation
Indices: 60784--60843 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 31
60774 CAGAAAAGTT
60784 ATATGCACTATGTGATAAAGGTATGGAAATG
1 ATATGCACTATGTGATAAAGGTATGGAAATG
*
60815 ATATGC-CTATGTGTTAAAGGTATGGAAAT
1 ATATGCACTATGTGATAAAGGTATGGAAAT
60844 ACTATGTCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 22 0.79
31 6 0.21
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (31 bp):
ATATGCACTATGTGATAAAGGTATGGAAATG
Found at i:61137 original size:22 final size:22
Alignment explanation
Indices: 61063--61129 Score: 134
Period size: 22 Copynumber: 3.0 Consensus size: 22
61053 TTATGGACAT
61063 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
61085 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
61107 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
61129 A
1 A
61130 TTTATACGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (22 bp):
AATTCTACGGGCACTTCGGTGC
Found at i:64000 original size:24 final size:24
Alignment explanation
Indices: 63973--64026 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
63963 ATGAAACATC
* *
63973 ATCAAAATTCGAGTATTGGCCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
63997 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
64021 ATCAAA
1 ATCAAA
64027 TTTTGAATAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:64173 original size:12 final size:12
Alignment explanation
Indices: 64152--64185 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
64142 AGTTGTGGAT
*
64152 TTTGAGATTGTG
1 TTTGATATTGTG
64164 TTTGATATTGTG
1 TTTGATATTGTG
*
64176 TTTGGTATTG
1 TTTGATATTG
64186 GAAATGTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.29, T:0.56
Consensus pattern (12 bp):
TTTGATATTGTG
Found at i:80059 original size:60 final size:60
Alignment explanation
Indices: 79934--80102 Score: 207
Period size: 60 Copynumber: 2.8 Consensus size: 60
79924 CCAATATAAT
* * * * *
79934 TATGTGTTTATTTTTAGGTACCAAGAT-TTTAGATATGTATATACGTACATAGGTGTATA
1 TATGTGTTTATTTTTAGGTACCAAGATATTTAGATATATACATACTTACACAGGTGTAAA
* * ** *
79993 TATGTGTTTATGTTTAGGTACCCAGATATCGAGATATATACATACTTATACCA-GTGTAAA
1 TATGTGTTTATTTTTAGGTACCAAGATATTTAGATATATACATACTTACA-CAGGTGTAAA
* *
80053 TATGTGTTTATTTTTAGGTGCCAAGATATTTAGAAATATACATACTTACA
1 TATGTGTTTATTTTTAGGTACCAAGATATTTAGATATATACATACTTACA
80103 TCGGTACAAG
Statistics
Matches: 91, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
59 25 0.27
60 65 0.71
61 1 0.01
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.41
Consensus pattern (60 bp):
TATGTGTTTATTTTTAGGTACCAAGATATTTAGATATATACATACTTACACAGGTGTAAA
Found at i:81194 original size:23 final size:23
Alignment explanation
Indices: 81168--81241 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 23
81158 CAGTTGAGGG
* * *
81168 TTCTATGCGGTCCTACGGGATAA
1 TTCTAAGCGGTCCTACGAGACAA
* * * *
81191 TTCTACGTGGTCCTTCGAGACAT
1 TTCTAAGCGGTCCTACGAGACAA
* *
81214 TTCTAAGCGGTCCTTCGAGACAT
1 TTCTAAGCGGTCCTACGAGACAA
81237 TTCTA
1 TTCTA
81242 TGTGATCCTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (23 bp):
TTCTAAGCGGTCCTACGAGACAA
Found at i:81258 original size:23 final size:23
Alignment explanation
Indices: 81191--81251 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
81181 TACGGGATAA
*
81191 TTCTACGTGGTCCTTCGAGACAT
1 TTCTAAGTGGTCCTTCGAGACAT
*
81214 TTCTAAGCGGTCCTTCGAGACAT
1 TTCTAAGTGGTCCTTCGAGACAT
* *
81237 TTCTATGTGATCCTT
1 TTCTAAGTGGTCCTT
81252 TGGGACAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.38
Consensus pattern (23 bp):
TTCTAAGTGGTCCTTCGAGACAT
Found at i:82349 original size:17 final size:17
Alignment explanation
Indices: 82310--82347 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
82300 TTCTTTCAAA
82310 TAAAATCATAATTTTTT
1 TAAAATCATAATTTTTT
82327 TAAAAT-ATAATTTTTT
1 TAAAATCATAATTTTTT
82343 TAAAA
1 TAAAA
82348 ATGGTTATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
TAAAATCATAATTTTTT
Found at i:83076 original size:34 final size:34
Alignment explanation
Indices: 83033--83133 Score: 130
Period size: 34 Copynumber: 3.0 Consensus size: 34
83023 CCCTTTTATT
*
83033 CTAAATGAACATATTCACAAACGATAAACGAACG
1 CTAAATGAACATATTCACGAACGATAAACGAACG
* * * *
83067 CTAAATGAACATGTTCACGAACGTTAAATGAATG
1 CTAAATGAACATATTCACGAACGATAAACGAACG
* * *
83101 CTAAATGAACACATTCATGAACGCTAAACGAAC
1 CTAAATGAACATATTCACGAACGATAAACGAAC
83134 ATATTCACGA
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 56 1.00
ACGTcount: A:0.46, C:0.20, G:0.14, T:0.21
Consensus pattern (34 bp):
CTAAATGAACATATTCACGAACGATAAACGAACG
Found at i:83120 original size:23 final size:23
Alignment explanation
Indices: 83094--83151 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
83084 CGAACGTTAA
* *
83094 ATGAATGCTAAATGAACACATTC
1 ATGAACGCTAAACGAACACATTC
*
83117 ATGAACGCTAAACGAACATATTC
1 ATGAACGCTAAACGAACACATTC
* *
83140 ACGAACGTTAAA
1 ATGAACGCTAAA
83152 TAAACAAACA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.22
Consensus pattern (23 bp):
ATGAACGCTAAACGAACACATTC
Found at i:83157 original size:23 final size:23
Alignment explanation
Indices: 83100--83157 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
83090 TTAAATGAAT
*
83100 GCTAAATGAACACATTCATGAAC
1 GCTAAATGAACACATTCACGAAC
* *
83123 GCTAAACGAACATATTCACGAAC
1 GCTAAATGAACACATTCACGAAC
* *
83146 GTTAAATAAACA
1 GCTAAATGAACA
83158 AACATGAAAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.47, C:0.21, G:0.12, T:0.21
Consensus pattern (23 bp):
GCTAAATGAACACATTCACGAAC
Found at i:83238 original size:17 final size:17
Alignment explanation
Indices: 83218--83250 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
83208 ACATTAAACT
83218 AACACAAACCGAATATG
1 AACACAAACCGAATATG
83235 AACACAAACCGAATAT
1 AACACAAACCGAATAT
83251 AAATACCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.24, G:0.09, T:0.12
Consensus pattern (17 bp):
AACACAAACCGAATATG
Found at i:87150 original size:21 final size:21
Alignment explanation
Indices: 87126--87179 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
87116 ATGTTAAGGG
*
87126 TTTAGGGTTTATATGA-TAAGA
1 TTTAGGGTTTAGAT-ATTAAGA
* *
87147 TTTAAGGTTTAGATATTAAGG
1 TTTAGGGTTTAGATATTAAGA
87168 TTTAGGGTTTAG
1 TTTAGGGTTTAG
87180 GGTTTATGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 1 0.04
21 27 0.96
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.44
Consensus pattern (21 bp):
TTTAGGGTTTAGATATTAAGA
Found at i:87176 original size:7 final size:7
Alignment explanation
Indices: 87166--87227 Score: 54
Period size: 7 Copynumber: 8.9 Consensus size: 7
87156 TAGATATTAA
87166 GGTTTAG
1 GGTTTAG
87173 GGTTTAG
1 GGTTTAG
87180 GGTTTATG
1 GGTTTA-G
87188 GG-TTAG
1 GGTTTAG
*
87194 AGTTTAG
1 GGTTTAG
* *
87201 AGTTTAA
1 GGTTTAG
* *
87208 AGTTTAA
1 GGTTTAG
87215 GGTTTAG
1 GGTTTAG
*
87222 AGTTTA
1 GGTTTA
87228 TGTGATATGA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
6 2 0.04
7 43 0.90
8 3 0.06
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (7 bp):
GGTTTAG
Found at i:87183 original size:14 final size:14
Alignment explanation
Indices: 87167--87262 Score: 72
Period size: 14 Copynumber: 6.9 Consensus size: 14
87157 AGATATTAAG
*
87167 GTTTAGGGTTTAGG
1 GTTTAGGGTTTAGA
87181 GTTTATGGG-TTAGA
1 GTTTA-GGGTTTAGA
* *
87195 GTTTAGAGTTTAAA
1 GTTTAGGGTTTAGA
*
87209 GTTTAAGGTTTAGA
1 GTTTAGGGTTTAGA
* *
87223 GTTTA-TGTGATATGA
1 GTTTAGGGT-TTA-GA
* *
87238 -TTTAAGGTTTATA
1 GTTTAGGGTTTAGA
87251 GTTTAGGGTTTA
1 GTTTAGGGTTTA
87263 AGGTTTAAGT
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
13 5 0.08
14 52 0.81
15 7 0.11
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (14 bp):
GTTTAGGGTTTAGA
Found at i:87193 original size:21 final size:21
Alignment explanation
Indices: 87169--87269 Score: 69
Period size: 21 Copynumber: 4.8 Consensus size: 21
87159 ATATTAAGGT
*
87169 TTAGGGTTTAGGGTTTATGGG
1 TTAGGGTTTAGGGTTTATAGG
* * * *
87190 TTAGAGTTTAGAGTTTAAAGT
1 TTAGGGTTTAGGGTTTATAGG
* *
87211 TTAAGGTTTAGAGTTTAT-GTG
1 TTAGGGTTTAGGGTTTATAG-G
* * * * *
87232 ATATGATTTAAGGTTTATAGT
1 TTAGGGTTTAGGGTTTATAGG
*
87253 TTAGGGTTTAAGGTTTA
1 TTAGGGTTTAGGGTTTA
87270 AGTTATGCAT
Statistics
Matches: 60, Mismatches: 18, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
20 1 0.02
21 58 0.97
22 1 0.02
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.46
Consensus pattern (21 bp):
TTAGGGTTTAGGGTTTATAGG
Found at i:87268 original size:14 final size:14
Alignment explanation
Indices: 87147--87269 Score: 60
Period size: 14 Copynumber: 8.8 Consensus size: 14
87137 TATGATAAGA
*
87147 TTTAAGGTTTA-GA
1 TTTAAGGTTTAGGG
87160 TATTAAGGTTTAGGG
1 T-TTAAGGTTTAGGG
*
87175 TTTAGGGTTTATGGG
1 TTTAAGGTTTA-GGG
*
87190 -TT-AGAGTTTAGAG
1 TTTAAG-GTTTAGGG
* *
87203 TTTAAAGTTTAAGG
1 TTTAAGGTTTAGGG
*
87217 TTT-AGAGTTTA-TG
1 TTTAAG-GTTTAGGG
* * * *
87230 TGATATGATTTAAGG
1 T-TTAAGGTTTAGGG
87245 TTTATA-GTTTAGGG
1 TTTA-AGGTTTAGGG
87259 TTTAAGGTTTA
1 TTTAAGGTTTA
87270 AGTTATGCAT
Statistics
Matches: 81, Mismatches: 17, Indels: 23
0.67 0.14 0.19
Matches are distributed among these distances:
13 8 0.10
14 64 0.79
15 9 0.11
ACGTcount: A:0.27, C:0.00, G:0.28, T:0.46
Consensus pattern (14 bp):
TTTAAGGTTTAGGG
Found at i:87269 original size:28 final size:28
Alignment explanation
Indices: 87167--87271 Score: 104
Period size: 28 Copynumber: 3.8 Consensus size: 28
87157 AGATATTAAG
* * *
87167 GTTTAGGGTTTAGGGTTTATGGGTTAGA
1 GTTTAGGGTTTAAGGTTTAAGGTTTAGA
* *
87195 GTTTAGAGTTTAAAGTTTAAGGTTTAGA
1 GTTTAGGGTTTAAGGTTTAAGGTTTAGA
* * * * *
87223 GTTTA-TGTGATATGATTTAAGGTTTATA
1 GTTTAGGGT-TTAAGGTTTAAGGTTTAGA
87251 GTTTAGGGTTTAAGGTTTAAG
1 GTTTAGGGTTTAAGGTTTAAG
87272 TTATGCATAT
Statistics
Matches: 60, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
27 2 0.03
28 56 0.93
29 2 0.03
ACGTcount: A:0.26, C:0.00, G:0.30, T:0.45
Consensus pattern (28 bp):
GTTTAGGGTTTAAGGTTTAAGGTTTAGA
Found at i:88943 original size:21 final size:21
Alignment explanation
Indices: 88919--88985 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
88909 GAATTCAGAG
88919 TTTAAGGTTTAATATTTAAGA
1 TTTAAGGTTTAATATTTAAGA
* *
88940 TTTAGGGTTT-ATATTTTAGTA
1 TTTAAGGTTTAATATTTAAG-A
**
88961 TTT-AGAGTTTAAGGTTTAAG-
1 TTTAAG-GTTTAATATTTAAGA
88981 TTTAA
1 TTTAA
88986 AGTTAACAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
20 12 0.33
21 18 0.50
22 6 0.17
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (21 bp):
TTTAAGGTTTAATATTTAAGA
Found at i:89152 original size:17 final size:17
Alignment explanation
Indices: 89130--89167 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
89120 CAACTAAAAC
*
89130 TAAAATTGGGA-AAATAA
1 TAAAATCGGGACAAAT-A
89147 TAAAATCGGGACAAATA
1 TAAAATCGGGACAAATA
89164 TAAA
1 TAAA
89168 TGGATAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.58, C:0.05, G:0.16, T:0.21
Consensus pattern (17 bp):
TAAAATCGGGACAAATA
Found at i:92508 original size:33 final size:30
Alignment explanation
Indices: 92423--92513 Score: 137
Period size: 30 Copynumber: 2.9 Consensus size: 30
92413 GGAACTTAAT
*
92423 TTGACATGTTTCAATCTTTTGTAAGTAAAC
1 TTGACATGTTGCAATCTTTTGTAAGTAAAC
92453 TTGACATGTTGCAATCTTTTGTAAGTAAAC
1 TTGACATGTTGCAATCTTTTGTAAGTAAAC
*
92483 TTGACATGTTGCTGCCATCTTTTGTAAGTAA
1 TTGACATG-T--TGCAATCTTTTGTAAGTAA
92514 GCATAACTGG
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
30 37 0.66
31 1 0.02
33 18 0.32
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.42
Consensus pattern (30 bp):
TTGACATGTTGCAATCTTTTGTAAGTAAAC
Found at i:92657 original size:37 final size:36
Alignment explanation
Indices: 92602--92675 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 36
92592 AGGAAAATAG
*
92602 TGTCATCTTGTATAAATTTGGATATATTGCCATATT
1 TGTCATCTTGTATAAATTTAGATATATTGCCATATT
* * * *
92638 TGTCATCTTTTTATAAATTTAGATGTGTTGTCATATT
1 TGTCATC-TTGTATAAATTTAGATATATTGCCATATT
92675 T
1 T
92676 TGTAAACTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
36 7 0.22
37 25 0.78
ACGTcount: A:0.26, C:0.09, G:0.14, T:0.51
Consensus pattern (36 bp):
TGTCATCTTGTATAAATTTAGATATATTGCCATATT
Found at i:93604 original size:16 final size:16
Alignment explanation
Indices: 93583--93623 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
93573 TGGTTATATT
*
93583 TCGGGTCGGGTTAATA
1 TCGGGTCGAGTTAATA
*
93599 TCGGGTCGATTTAATA
1 TCGGGTCGAGTTAATA
*
93615 TCGGATCGA
1 TCGGGTCGA
93624 TTGATTTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.32
Consensus pattern (16 bp):
TCGGGTCGAGTTAATA
Found at i:93624 original size:16 final size:16
Alignment explanation
Indices: 93593--93625 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
93583 TCGGGTCGGG
*
93593 TTAATATCGGGTCGAT
1 TTAATATCGGATCGAT
93609 TTAATATCGGATCGAT
1 TTAATATCGGATCGAT
93625 T
1 T
93626 GATTTTTGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.39
Consensus pattern (16 bp):
TTAATATCGGATCGAT
Found at i:94388 original size:21 final size:21
Alignment explanation
Indices: 94355--94395 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
94345 TCAGGTTTTT
*
94355 TTCGATTTGAGTTAATTTCGG
1 TTCGATTTAAGTTAATTTCGG
*
94376 TTCGGTTTAAGTTAATTTCG
1 TTCGATTTAAGTTAATTTCG
94396 ATTTGGGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.10, G:0.22, T:0.49
Consensus pattern (21 bp):
TTCGATTTAAGTTAATTTCGG
Found at i:98053 original size:16 final size:16
Alignment explanation
Indices: 98032--98070 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
98022 GTTAGATTTT
98032 GGGTCGAGTCAATATC
1 GGGTCGAGTCAATATC
98048 GGGTCGAGTCAATATC
1 GGGTCGAGTCAATATC
*
98064 GGATCGA
1 GGGTCGA
98071 TTGATTTTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.33, T:0.23
Consensus pattern (16 bp):
GGGTCGAGTCAATATC
Found at i:99308 original size:18 final size:19
Alignment explanation
Indices: 99281--99327 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
99271 GAATCTAACA
* *
99281 AAATTGTAAACATTAAT-T
1 AAATTATAAAAATTAATAT
*
99299 AAATTATAAAAATTAGTAT
1 AAATTATAAAAATTAATAT
99318 AAATTATAAA
1 AAATTATAAA
99328 TAAATAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 14 0.56
19 11 0.44
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.36
Consensus pattern (19 bp):
AAATTATAAAAATTAATAT
Found at i:99508 original size:18 final size:19
Alignment explanation
Indices: 99481--99527 Score: 69
Period size: 18 Copynumber: 2.5 Consensus size: 19
99471 GAATCCAACA
*
99481 AAATTGTAAAAATTAAT-T
1 AAATTATAAAAATTAATAT
*
99499 AAATTATAAAAATTAGTAT
1 AAATTATAAAAATTAATAT
99518 AAATTATAAA
1 AAATTATAAA
99528 TAACTAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 15 0.58
19 11 0.42
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (19 bp):
AAATTATAAAAATTAATAT
Found at i:99510 original size:27 final size:26
Alignment explanation
Indices: 99480--99548 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 26
99470 GGAATCCAAC
*
99480 AAAATTGTAAAAATTAATTAAATTA-TA
1 AAAATTGTAAAAATT-A-TAAATAACTA
*
99507 AAAATTAGTATAAATTATAAATAACTA
1 AAAATT-GTAAAAATTATAAATAACTA
99534 AAAATT-TAAATAATT
1 AAAATTGTAAA-AATT
99549 TACTAAAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
25 3 0.08
26 10 0.28
27 15 0.42
28 8 0.22
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.36
Consensus pattern (26 bp):
AAAATTGTAAAAATTATAAATAACTA
Found at i:99515 original size:200 final size:200
Alignment explanation
Indices: 99172--99570 Score: 647
Period size: 200 Copynumber: 2.0 Consensus size: 200
99162 TACATCTCAG
** * *
99172 CAATCGGAAAATGAAGCAAAGACATTACGACACACCACAACTATGAGTCTTCAAAAAAATCTCGG
1 CAATCGGAAAATGAAGCAAAGACATTACGACACACCACAACTACAAGCCTTCAAAAAAATCCCGG
* * * * *
99237 TGACAGTAACAATATATCTCCAGCTCACAATATGGAATCTAACAAAATTGTAAACATTAATTAAA
66 TGACAGTAACAATAGATCTCCAGCTCACAAAACGGAATCCAACAAAATTGTAAAAATTAATTAAA
99302 TTATAAAAATTAGTATAAATTATAAATAAATAAAAATTTAAATAATTTACTAAAATAATATTCAT
131 TTATAAAAATTAGTATAAATTATAAATAAATAAAAATTTAAATAATTTACTAAAATAATATTCAT
99367 CGCAA
196 CGCAA
*
99372 CAATCGGAAAATGAAGCAAA-AGCATTACGACACACCACAACTCCAAGCCTTCAAAAAAATCCCG
1 CAATCGGAAAATGAAGCAAAGA-CATTACGACACACCACAACTACAAGCCTTCAAAAAAATCCCG
** **
99436 GTGACAGTAACTGTAGATCTCTGGCTCACAAAACGGAATCCAACAAAATTGTAAAAATTAATTAA
65 GTGACAGTAACAATAGATCTCCAGCTCACAAAACGGAATCCAACAAAATTGTAAAAATTAATTAA
*
99501 ATTATAAAAATTAGTATAAATTATAAATAACTAAAAATTTAAATAATTTACTAAAATAATATTCA
130 ATTATAAAAATTAGTATAAATTATAAATAAATAAAAATTTAAATAATTTACTAAAATAATATTCA
99566 TCGCA
195 TCGCA
99571 TGTCTGTCAA
Statistics
Matches: 183, Mismatches: 15, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
199 1 0.01
200 182 0.99
ACGTcount: A:0.48, C:0.16, G:0.10, T:0.26
Consensus pattern (200 bp):
CAATCGGAAAATGAAGCAAAGACATTACGACACACCACAACTACAAGCCTTCAAAAAAATCCCGG
TGACAGTAACAATAGATCTCCAGCTCACAAAACGGAATCCAACAAAATTGTAAAAATTAATTAAA
TTATAAAAATTAGTATAAATTATAAATAAATAAAAATTTAAATAATTTACTAAAATAATATTCAT
CGCAA
Found at i:101406 original size:8 final size:8
Alignment explanation
Indices: 101393--101417 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
101383 ATAATATTTA
101393 TTTAAAAT
1 TTTAAAAT
101401 TTTAAAAT
1 TTTAAAAT
101409 TTTAAAAT
1 TTTAAAAT
101417 T
1 T
101418 AAATTCAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TTTAAAAT
Done.