genome.fa.s2107.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002107.1 Hibiscus syriacus cultivar Beakdansim tig00004310_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55861

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1400--1424	12	2.1	12	100	0	50	24	16	44	16	1.86
1454--1588	29	4.5	29	73	10	110	25	34	23	16	1.95
2207--2254	21	2.3	20	82	7	60	31	0	16	52	1.45
2213--2285	27	2.6	28	85	8	96	30	0	13	56	1.38
5286--6037	58	13.2	59	84	13	908	41	0	12	46	1.44
5350--5452	35	3.2	35	64	25	100	40	0	11	47	1.40
5488--5514	14	1.9	14	100	0	54	37	0	11	51	1.37
5456--6302	58	15.2	59	84	13	1058	41	0	12	46	1.43
5662--5747	14	5.9	14	67	17	50	39	0	10	50	1.37
5804--5906	45	2.2	47	89	6	158	42	1	11	43	1.52
5971--6135	56	3.4	47	82	15	210	41	0	12	46	1.42
6019--6114	25	3.3	31	66	18	87	40	0	11	47	1.39
5287--6302	559	1.8	546	88	8	1574	40	0	12	46	1.43
6062--6203	11	12.5	11	68	24	55	39	0	14	45	1.45
6118--6203	21	4.2	20	63	16	52	39	0	15	45	1.46
6121--6298	46	3.6	49	79	16	181	40	0	12	46	1.42
5341--6302	219	4.3	219	82	13	1154	40	0	12	46	1.43
6281--6317	11	3.2	11	85	14	56	37	0	18	43	1.51
6270--6317	24	2.0	25	95	4	89	37	0	18	43	1.51
6270--6315	13	3.6	13	85	14	69	36	0	19	43	1.51
8621--8723	30	3.4	30	82	12	106	47	10	1	39	1.49
8902--8941	21	1.9	21	100	0	80	57	15	0	27	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8969--9023	18	3.4	18	65	31	52	52	9	0	38	1.33
9043--9114	38	2.0	37	86	13	105	48	9	0	41	1.36
9139--9203	28	2.3	29	82	10	82	46	15	1	36	1.55
9494--9527	11	3.0	11	83	8	50	41	17	20	20	1.91
9622--9734	29	3.9	29	90	2	174	16	30	27	24	1.97
10047--10104	29	2.0	29	86	3	82	12	22	44	20	1.84
23860--23903	19	2.2	20	80	4	54	18	6	4	70	1.27
23870--23911	10	4.2	10	88	8	59	19	7	2	71	1.20
24485--24544	2	30.0	2	100	0	120	50	0	0	50	1.00
26371--26428	20	2.9	20	92	0	98	24	25	10	39	1.87
31370--31461	40	2.3	40	81	3	114	39	11	35	13	1.81
31388--31451	20	3.2	20	66	16	51	37	7	40	14	1.74
31759--31860	41	2.5	41	82	1	125	32	15	23	28	1.95
31764--31927	41	4.0	43	74	12	121	35	15	20	28	1.93
32582--32644	23	2.6	24	78	11	76	42	4	0	52	1.22
32548--32661	27	4.0	28	74	20	87	44	4	0	50	1.21
32588--32661	27	2.8	27	83	10	98	41	4	0	54	1.19
33639--33667	14	2.1	14	93	6	51	44	0	0	55	0.99
33917--33941	2	12.5	2	100	0	50	48	0	0	52	1.00
44035--44342	2	162.0	2	65	26	102	49	4	4	41	1.43
44113--44362	37	6.8	37	79	12	216	51	3	6	38	1.45
44392--44436	22	2.1	21	88	8	65	20	6	26	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44516--44732	14	15.1	14	68	19	101	47	3	9	40	1.52
44581--44778	57	3.4	56	76	11	200	47	2	10	38	1.52
45296--45325	12	2.4	13	88	11	53	46	0	6	46	1.29
45531--45565	16	2.2	16	89	0	52	25	17	28	28	1.97
50269--50363	29	3.3	29	93	0	154	15	32	34	16	1.91
50430--50467	20	1.9	20	94	0	67	15	13	50	21	1.78
50431--50474	20	2.2	20	87	0	61	15	13	50	20	1.78
50417--50523	51	2.1	51	100	0	214	15	12	50	21	1.77
50481--50518	20	1.9	20	94	0	67	15	13	50	21	1.78
50991--51034	21	2.1	21	91	0	70	29	0	15	54	1.42
51011--51101	28	3.2	28	95	3	155	31	0	10	57	1.34
51010--51084	8	10.4	8	71	25	53	29	0	12	58	1.34
51011--51121	56	2.0	55	81	8	127	36	0	9	54	1.34
51061--51174	50	2.4	48	80	12	130	42	0	7	49	1.38
51608--51652	21	2.2	21	84	4	56	35	0	8	55	1.31
51913--51971	26	2.3	25	75	18	66	47	8	3	40	1.51
55414--55453	15	2.7	16	81	14	50	57	7	0	35	1.27
55506--55583	31	2.5	33	81	10	92	47	11	0	41	1.40
55641--55755	42	2.7	42	75	12	110	48	10	0	40	1.37
55811--55851	16	2.4	18	80	8	50	60	2	0	36	1.10

Tables:   1

The End!