Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002108.1 Hibiscus syriacus cultivar Beakdansim tig00004313_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131245

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
664--701
10
3.8
10
80
13
51
34
18
10
36
1.85
3433--3567
35
3.8
35
81
9
159
38
20
19
21
1.94
3424--3567
71
2.0
71
87
2
209
40
19
19
20
1.92
4182--4514
36
9.2
36
81
6
316
21
23
20
33
1.97
4181--4513
180
1.9
179
86
4
483
21
23
20
33
1.97
29055--29092
6
6.5
6
90
3
60
18
0
52
28
1.45
30083--30138
17
3.6
16
79
15
55
66
1
7
25
1.27
31240--31278
21
1.9
19
85
10
51
71
2
2
23
1.10
31233--31305
30
2.3
31
79
13
76
69
2
1
26
1.09
31356--31693
37
8.9
37
76
11
242
40
10
4
44
1.59
31512--31658
41
3.7
40
80
5
154
43
6
4
45
1.49
31473--31714
81
3.1
79
78
12
187
41
9
4
43
1.59
32641--32678
2
19.0
2
94
0
67
50
2
0
47
1.15
35739--35895
36
4.3
36
82
4
181
42
2
11
43
1.54
35739--35937
36
5.2
38
77
10
176
43
2
10
44
1.50
35671--35803
69
2.0
68
80
4
153
45
3
9
40
1.55
35738--35923
74
2.5
73
86
9
261
43
2
10
43
1.51
36090--36130
21
2.0
21
100
0
82
29
0
12
58
1.34
36181--36239
25
2.4
24
80
11
66
16
10
0
72
1.10
36181--36239
13
4.8
11
78
17
55
16
10
0
72
1.10
37337--37383
25
2.0
24
83
8
60
10
14
0
74
1.07
37455--37488
4
8.8
4
87
6
52
23
2
0
73
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37666--37695
13
2.3
13
94
0
51
30
0
0
70
0.88
39419--39443
13
1.9
13
100
0
50
36
40
0
24
1.55
39850--40230
189
2.0
189
99
0
753
38
9
18
33
1.84
44701--44731
15
2.1
15
100
0
62
48
12
6
32
1.67
44832--44864
16
2.1
16
100
0
66
45
18
0
36
1.49
47122--47205
20
4.0
21
73
11
64
15
25
34
25
1.95
51058--51287
117
2.0
117
81
5
277
29
13
8
47
1.73
54918--54966
21
2.3
22
82
3
55
26
8
16
48
1.73
55247--55292
21
2.2
21
84
7
58
19
6
21
52
1.69
54757--55428
167
4.0
165
78
7
624
26
12
15
45
1.82
71324--71361
20
2.0
20
89
5
60
55
5
34
5
1.45
72019--72210
4
45.8
4
70
14
120
26
3
4
66
1.24
72018--72147
15
7.9
16
68
19
72
24
3
3
68
1.21
72017--72090
19
3.7
19
78
16
69
24
4
2
68
1.19
72017--72144
23
5.6
23
76
14
106
24
3
3
68
1.21
72026--72210
27
6.9
27
68
18
102
26
3
4
65
1.26
72139--72191
19
2.5
20
85
14
72
30
1
7
60
1.35
72026--72203
50
3.5
49
79
9
146
26
3
4
65
1.28
72075--72212
54
2.5
56
79
8
156
26
2
5
65
1.26
74182--74232
23
2.2
23
89
6
77
27
7
7
56
1.55
74281--74331
18
2.9
17
77
5
57
37
5
3
52
1.44
77700--77762
33
1.9
33
90
0
99
42
31
0
25
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77759--77808
14
3.6
14
76
10
57
40
24
4
32
1.73
85738--85781
23
1.9
23
95
0
79
29
6
38
25
1.81
102135--103898
610
2.8
618
83
6
2160
28
18
18
34
1.94
108245--108271
4
6.8
4
100
0
54
77
0
0
22
0.76
120879--120907
14
2.0
15
93
6
51
44
0
0
55
0.99
121194--121225
15
2.1
15
94
0
55
25
40
0
34
1.56
122089--122129
21
2.0
21
90
0
64
46
0
0
53
1.00
122119--122244
29
4.6
26
69
21
71
37
4
1
56
1.30
122263--122358
22
4.1
22
75
13
93
53
3
1
42
1.23
122261--122365
23
4.4
23
73
14
97
53
2
0
42
1.22
123317--123478
20
7.9
20
76
8
114
38
25
19
16
1.92
123381--123478
22
4.7
21
84
6
128
34
27
19
18
1.95
123319--123486
40
4.1
40
75
11
153
39
24
19
16
1.91

Tables:   1

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