Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002109.1 Hibiscus syriacus cultivar Beakdansim tig00004314_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70063
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34
Found at i:2356 original size:42 final size:42
Alignment explanation
Indices: 2253--2532 Score: 456
Period size: 42 Copynumber: 6.7 Consensus size: 42
2243 CAATCGATAG
*
2253 TCCAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGCG-GTT-T
1 TCCAAGTT--CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTAT
*
2295 TCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTAT
1 TCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTAT
* * * *
2337 TTCAAATTCGTTGCGATAGTCGAAATTCGTGTTGCGATTTAT
1 TCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTAT
2379 TCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTAT
1 TCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTAT
2421 TCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTAT
1 TCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTAT
2463 TCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTAT
1 TCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTAT
* *
2505 TCCAAGTTCGTTGTGATAGTCCAAGTTC
1 TCCAAGTTCGTTGCGATAGTCGAAGTTC
2533 CAAAATCGTA
Statistics
Matches: 225, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
40 28 0.12
41 2 0.01
42 195 0.87
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.36
Consensus pattern (42 bp):
TCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTAT
Found at i:4400 original size:25 final size:23
Alignment explanation
Indices: 4372--4423 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
4362 CCACTAGGGG
*
4372 CTATGAAATTTATCCCGAATGACCA
1 CTATGAAA--TATCCCGAAGGACCA
*
4397 CTATGAAATGTCCCGAAGGACCA
1 CTATGAAATATCCCGAAGGACCA
4420 CTAT
1 CTAT
4424 ATCCCGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 17 0.68
25 8 0.32
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (23 bp):
CTATGAAATATCCCGAAGGACCA
Found at i:7736 original size:13 final size:14
Alignment explanation
Indices: 7718--7746 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7708 TTCACTTCGA
7718 CAATTTCTATA-AT
1 CAATTTCTATATAT
7731 CAATTTCTATATAT
1 CAATTTCTATATAT
7745 CA
1 CA
7747 TACAAATCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.38, C:0.17, G:0.00, T:0.45
Consensus pattern (14 bp):
CAATTTCTATATAT
Found at i:8669 original size:23 final size:24
Alignment explanation
Indices: 8629--8680 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
8619 CACTAGGGGA
*
8629 TATGAAATTTGTCCCGAATGACCAC
1 TATGAAA-TTGTCCCGAAGGACCAC
*
8654 TATGAAA-TGTCTCGAAGGACCAC
1 TATGAAATTGTCCCGAAGGACCAC
8677 TATG
1 TATG
8681 TCTCGAAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 18 0.72
25 7 0.28
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (24 bp):
TATGAAATTGTCCCGAAGGACCAC
Found at i:8683 original size:18 final size:18
Alignment explanation
Indices: 8660--8697 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
8650 CCACTATGAA
8660 ATGTCTCGAAGGACCACT
1 ATGTCTCGAAGGACCACT
8678 ATGTCTCGAAGGACCACT
1 ATGTCTCGAAGGACCACT
8696 AT
1 AT
8698 AAATCCCTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (18 bp):
ATGTCTCGAAGGACCACT
Found at i:11843 original size:24 final size:27
Alignment explanation
Indices: 11792--11844 Score: 67
Period size: 24 Copynumber: 2.1 Consensus size: 27
11782 AAAATATTAG
*
11792 TTTAACTAAAAAAAGTTAAGAATCAAA
1 TTTAACTAAAAAAAGTTAAGAATAAAA
*
11819 TTTAA-TAAAAATA-TTAA-AATAAAA
1 TTTAACTAAAAAAAGTTAAGAATAAAA
11843 TT
1 TT
11845 CCTAAATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.33
25 4 0.17
26 7 0.29
27 5 0.21
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (27 bp):
TTTAACTAAAAAAAGTTAAGAATAAAA
Found at i:18065 original size:28 final size:28
Alignment explanation
Indices: 18017--18081 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
18007 CAGCAAGGCT
* *
18017 GACCATATATCATTCATGCGGTAGAACC
1 GACCATATATCAATCACGCGGTAGAACC
*
18045 GACCATATATCAATCACGCGGTAGAGCC
1 GACCATATATCAATCACGCGGTAGAACC
*
18073 AACCATATA
1 GACCATATA
18082 ATAGAACTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (28 bp):
GACCATATATCAATCACGCGGTAGAACC
Found at i:30639 original size:3 final size:3
Alignment explanation
Indices: 30631--30659 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
30621 ACATGACATT
30631 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
30660 TTGTTAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:31605 original size:18 final size:18
Alignment explanation
Indices: 31582--31624 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
31572 CGAACAAATG
31582 AACGAACACAAATAACTA
1 AACGAACACAAATAACTA
31600 AACGAACACAAATAACTA
1 AACGAACACAAATAACTA
31618 AACGAAC
1 AACGAAC
31625 TTAGTGTTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.60, C:0.23, G:0.07, T:0.09
Consensus pattern (18 bp):
AACGAACACAAATAACTA
Found at i:32439 original size:24 final size:24
Alignment explanation
Indices: 32412--32483 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
32402 GTAAACGGAG
*
32412 ATATCAGAAATCAAAACAGAATTC
1 ATATCAGAAATCAGAACAGAATTC
* * *
32436 ATATCAGATATCAGAACATAATCC
1 ATATCAGAAATCAGAACAGAATTC
*
32460 AGATCAG-AATCAGAACAGAATTC
1 ATATCAGAAATCAGAACAGAATTC
32483 A
1 A
32484 GGTAACGTAT
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
23 14 0.35
24 26 0.65
ACGTcount: A:0.50, C:0.18, G:0.11, T:0.21
Consensus pattern (24 bp):
ATATCAGAAATCAGAACAGAATTC
Found at i:32462 original size:12 final size:11
Alignment explanation
Indices: 32420--32504 Score: 55
Period size: 12 Copynumber: 7.3 Consensus size: 11
32410 AGATATCAGA
*
32420 AATCAAAACAG
1 AATCAGAACAG
* *
32431 AATTCATATCAG
1 AA-TCAGAACAG
*
32443 ATATCAGAACAT
1 A-ATCAGAACAG
*
32455 AATCCAGATCAG
1 AAT-CAGAACAG
32467 AATCAGAACAG
1 AATCAGAACAG
32478 AATTCAGGTAAC-G
1 AA-TCA-G-AACAG
*
32491 TATCAGAACAG
1 AATCAGAACAG
32502 AAT
1 AAT
32505 TCAATTCGGA
Statistics
Matches: 57, Mismatches: 10, Indels: 14
0.70 0.12 0.17
Matches are distributed among these distances:
10 3 0.05
11 17 0.30
12 30 0.53
13 4 0.07
14 3 0.05
ACGTcount: A:0.48, C:0.18, G:0.14, T:0.20
Consensus pattern (11 bp):
AATCAGAACAG
Found at i:34968 original size:15 final size:16
Alignment explanation
Indices: 34938--34977 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
34928 GGTCAACATT
34938 GGTCAACGCCGGTCAAC
1 GGTCAACG-CGGTCAAC
34955 GGTCAACG-GGTCAAC
1 GGTCAACGCGGTCAAC
*
34970 GGTGAACG
1 GGTCAACG
34978 AGTTAACGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 14 0.64
17 8 0.36
ACGTcount: A:0.25, C:0.28, G:0.35, T:0.12
Consensus pattern (16 bp):
GGTCAACGCGGTCAAC
Found at i:35024 original size:18 final size:18
Alignment explanation
Indices: 34984--35024 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
34974 AACGAGTTAA
34984 CGGGTCGGGTCAACAGGT
1 CGGGTCGGGTCAACAGGT
* **
35002 TGGGTCGGGTCAATGGGT
1 CGGGTCGGGTCAACAGGT
35020 CGGGT
1 CGGGT
35025 AAACGGGTCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.12, C:0.17, G:0.49, T:0.22
Consensus pattern (18 bp):
CGGGTCGGGTCAACAGGT
Found at i:37114 original size:24 final size:24
Alignment explanation
Indices: 37087--37158 Score: 101
Period size: 24 Copynumber: 3.0 Consensus size: 24
37077 GTAAACGGAG
*
37087 ATATCAGAAATCAAAACAGAATTC
1 ATATCAGAAATCAGAACAGAATTC
* *
37111 ATATCAGATATCAGAACAGAATCC
1 ATATCAGAAATCAGAACAGAATTC
*
37135 AGATCAG-AATCAGAACAGAATTC
1 ATATCAGAAATCAGAACAGAATTC
37158 A
1 A
37159 GGTAACGTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
23 15 0.36
24 27 0.64
ACGTcount: A:0.50, C:0.18, G:0.12, T:0.19
Consensus pattern (24 bp):
ATATCAGAAATCAGAACAGAATTC
Found at i:37118 original size:12 final size:12
Alignment explanation
Indices: 37091--37159 Score: 61
Period size: 12 Copynumber: 5.8 Consensus size: 12
37081 ACGGAGATAT
* *
37091 CAGAAATCAAAA
1 CAGAATTCAGAA
* *
37103 CAGAATTCATAT
1 CAGAATTCAGAA
37115 CAG-ATATCAGAA
1 CAGAAT-TCAGAA
* *
37127 CAGAATCCAGAT
1 CAGAATTCAGAA
37139 CAGAA-TCAGAA
1 CAGAATTCAGAA
37150 CAGAATTCAG
1 CAGAATTCAG
37160 GTAACGTATC
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
11 11 0.24
12 32 0.71
13 2 0.04
ACGTcount: A:0.49, C:0.19, G:0.14, T:0.17
Consensus pattern (12 bp):
CAGAATTCAGAA
Found at i:37170 original size:47 final size:48
Alignment explanation
Indices: 37089--37179 Score: 116
Period size: 47 Copynumber: 1.9 Consensus size: 48
37079 AAACGGAGAT
*
37089 ATCAGAAATCAAAACAGAATTCATATCAGATATCAGAACAGAATCCAG
1 ATCAGAAATCAAAACAGAATTCATAACAGATATCAGAACAGAATCCAG
* *
37137 ATCAG-AATCAGAACAGAATTCAGGTAAC-G-TATCATAACAGAAT
1 ATCAGAAATCAAAACAGAATTCA--TAACAGATATCAGAACAGAAT
37180 TCAATTCGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
47 29 0.76
48 6 0.16
49 3 0.08
ACGTcount: A:0.48, C:0.18, G:0.14, T:0.20
Consensus pattern (48 bp):
ATCAGAAATCAAAACAGAATTCATAACAGATATCAGAACAGAATCCAG
Found at i:38436 original size:18 final size:18
Alignment explanation
Indices: 38409--38443 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
38399 CTCATATTTT
*
38409 CGGGTTGGGTCGGGTCAA
1 CGGGTCGGGTCGGGTCAA
38427 CGGGTCGGGTCGGGTCA
1 CGGGTCGGGTCGGGTCA
38444 GGTTATGACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.09, C:0.20, G:0.51, T:0.20
Consensus pattern (18 bp):
CGGGTCGGGTCGGGTCAA
Found at i:39462 original size:28 final size:28
Alignment explanation
Indices: 39411--39477 Score: 102
Period size: 28 Copynumber: 2.5 Consensus size: 28
39401 TAGAGAATAG
39411 GAATGAATAT--AAAAAACAACATAAAC
1 GAATGAATATAAAAAAAACAACATAAAC
* *
39437 GAATGAATTTAAAAAAAACAATATAAAC
1 GAATGAATATAAAAAAAACAACATAAAC
39465 GAATGAATATAAA
1 GAATGAATATAAA
39478 TAATAAAATG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 9 0.25
28 27 0.75
ACGTcount: A:0.64, C:0.07, G:0.09, T:0.19
Consensus pattern (28 bp):
GAATGAATATAAAAAAAACAACATAAAC
Found at i:39482 original size:9 final size:10
Alignment explanation
Indices: 39466--39499 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
39456 AATATAAACG
39466 AATGAATATA
1 AATGAATATA
39476 AAT-AATA-A
1 AATGAATATA
39484 AATGAATATA
1 AATGAATATA
39494 AATGAA
1 AATGAA
39500 CGTATTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 4 0.18
9 8 0.36
10 10 0.45
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (10 bp):
AATGAATATA
Found at i:45024 original size:2 final size:2
Alignment explanation
Indices: 45017--45053 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
45007 GATAATTTAA
45017 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
45054 AGATGGTCGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:48031 original size:13 final size:14
Alignment explanation
Indices: 47996--48037 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
47986 TTTTGTTGTT
47996 TATTAAAAAAATTATC
1 TATT-AAAAAATTA-C
*
48012 TACTAAAAAATTA-
1 TATTAAAAAATTAC
48025 TATTAAAAAATTA
1 TATTAAAAAATTA
48038 ATAAACTGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 12 0.50
15 9 0.38
16 3 0.12
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (14 bp):
TATTAAAAAATTAC
Found at i:53304 original size:59 final size:59
Alignment explanation
Indices: 53236--53350 Score: 185
Period size: 59 Copynumber: 1.9 Consensus size: 59
53226 TATAGCAATG
* *
53236 TTATAGGAGTGTACATAAGTTACGATGGAATGGCTCATACTAATTTTTTAATTGTTAAA
1 TTATAGGAGTGTACATAAGTTACCATCGAATGGCTCATACTAATTTTTTAATTGTTAAA
* * *
53295 TTATAGGAGTGTATATAAGTTACCATCGAGTGGCTCATACTAATTTTTTGATTGTT
1 TTATAGGAGTGTACATAAGTTACCATCGAATGGCTCATACTAATTTTTTAATTGTT
53351 CAGATTGTCT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
59 51 1.00
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (59 bp):
TTATAGGAGTGTACATAAGTTACCATCGAATGGCTCATACTAATTTTTTAATTGTTAAA
Found at i:58427 original size:45 final size:45
Alignment explanation
Indices: 58363--58591 Score: 392
Period size: 45 Copynumber: 5.2 Consensus size: 45
58353 CTTGTACGTA
*
58363 CAGGCCACAGGCTGTGCAACAACAAGGACTGCTGAATCAAACTCC
1 CAGGCCACAGGCTGTGCAACAACAAGGATTGCTGAATCAAACTCC
*
58408 CAGGCCACAGGCTGTGCAACAACAAGGATTGCTGAATCACACTCC
1 CAGGCCACAGGCTGTGCAACAACAAGGATTGCTGAATCAAACTCC
* *
58453 CAGGCCACAGACTGTG---CAACAAGGATTGCTGAATCACACTCC
1 CAGGCCACAGGCTGTGCAACAACAAGGATTGCTGAATCAAACTCC
*
58495 CAGGCCACAGACTGTGCAACAACAAGGATTGCTGAATCAAACTCC
1 CAGGCCACAGGCTGTGCAACAACAAGGATTGCTGAATCAAACTCC
58540 CAGGCCACAGGCTGTGCAACAACAAGGATTGCTGAATCAAACTCC
1 CAGGCCACAGGCTGTGCAACAACAAGGATTGCTGAATCAAACTCC
58585 CAGGCCA
1 CAGGCCA
58592 AATCCTACAT
Statistics
Matches: 176, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
42 42 0.24
45 134 0.76
ACGTcount: A:0.33, C:0.31, G:0.22, T:0.15
Consensus pattern (45 bp):
CAGGCCACAGGCTGTGCAACAACAAGGATTGCTGAATCAAACTCC
Found at i:58512 original size:87 final size:88
Alignment explanation
Indices: 58363--58591 Score: 370
Period size: 87 Copynumber: 2.6 Consensus size: 88
58353 CTTGTACGTA
* *
58363 CAGGCCACAGGCTGTGCAACAACAAGGACTGCTGAATCAAACTCCCAGGCCACAGGCTGTGCAAC
1 CAGGCCACAGGCTGTG--ACAACAAGGATTGCTGAATCAAACTCCCAGGCCACAGACTGTGCAAC
*
58428 AACAAGGATTGCTGAATCACACTCC
64 AACAAGGATTGCTGAATCAAACTCC
* *
58453 CAGGCCACAGACTGTG-CAACAAGGATTGCTGAATCACACTCCCAGGCCACAGACTGTGCAACAA
1 CAGGCCACAGGCTGTGACAACAAGGATTGCTGAATCAAACTCCCAGGCCACAGACTGTGCAACAA
58517 CAAGGATTGCTGAATCAAACTCC
66 CAAGGATTGCTGAATCAAACTCC
58540 CAGGCCACAGGCTGTGCAACAACAAGGATTGCTGAATCAAACTCCCAGGCCA
1 CAGGCCACAGGCTGTG--ACAACAAGGATTGCTGAATCAAACTCCCAGGCCA
58592 AATCCTACAT
Statistics
Matches: 129, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
87 82 0.64
90 47 0.36
ACGTcount: A:0.33, C:0.31, G:0.22, T:0.15
Consensus pattern (88 bp):
CAGGCCACAGGCTGTGACAACAAGGATTGCTGAATCAAACTCCCAGGCCACAGACTGTGCAACAA
CAAGGATTGCTGAATCAAACTCC
Found at i:60778 original size:21 final size:22
Alignment explanation
Indices: 60727--60778 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
60717 AAGGTAATGC
*
60727 TTGTGAATATAATATGTATGAT
1 TTGTGTATATAATATGTATGAT
*
60749 TTTTGGTATAT-ATATGT-TGCAT
1 TTGT-GTATATAATATGTATG-AT
60771 TTGTGTAT
1 TTGTGTAT
60779 GTATTATTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
21 6 0.24
22 14 0.56
23 5 0.20
ACGTcount: A:0.27, C:0.02, G:0.19, T:0.52
Consensus pattern (22 bp):
TTGTGTATATAATATGTATGAT
Found at i:62442 original size:18 final size:18
Alignment explanation
Indices: 62421--62458 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
62411 CGGTATTATA
62421 TTCTTATTATTTATTAAT
1 TTCTTATTATTTATTAAT
* *
62439 TTCTTTTTTTTTATTAAT
1 TTCTTATTATTTATTAAT
62457 TT
1 TT
62459 TGATGAAAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (18 bp):
TTCTTATTATTTATTAAT
Done.