genome.fa.s2110.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002110.1 Hibiscus syriacus cultivar Beakdansim tig00004316_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71047

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5547--5606	30	2.0	30	100	0	120	56	3	10	30	1.48
11009--11034	5	5.2	5	100	0	52	61	0	0	38	0.96
14082--14149	3	23.0	3	96	3	129	67	0	0	32	0.91
19649--19691	18	2.4	18	96	0	77	25	16	32	25	1.96
23071--23625	8	71.8	8	76	16	476	40	2	7	50	1.42
23071--23636	39	14.6	39	79	14	481	40	2	6	50	1.42
23131--23625	47	10.5	47	82	11	536	40	1	7	50	1.41
25880--26238	172	2.1	173	89	1	560	37	18	5	39	1.72
26691--26734	23	1.9	23	100	0	88	25	40	25	9	1.84
26751--26804	22	2.5	22	87	0	90	16	35	18	29	1.93
28219--28271	21	2.5	22	84	6	74	22	24	18	33	1.97
29148--29201	24	2.2	24	93	0	90	20	18	20	40	1.91
31635--31703	20	3.4	21	84	7	99	34	26	20	18	1.96
33342--33386	21	2.3	18	81	11	54	24	11	42	22	1.86
33296--33407	42	2.7	42	76	2	118	23	17	37	21	1.94
33895--33978	20	4.2	20	84	0	114	41	20	17	20	1.90
33974--34019	20	2.3	20	96	0	83	17	19	23	39	1.92
33895--33978	40	2.1	40	90	0	132	41	20	17	20	1.90
34012--34050	14	2.8	14	100	0	78	7	7	28	56	1.55
35973--36022	20	2.5	20	90	0	73	36	28	18	18	1.94
35993--36065	33	2.2	34	85	7	96	39	26	20	13	1.90
36631--36760	20	6.6	20	81	8	167	22	20	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36664--36781	59	2.0	59	94	0	209	27	18	17	35	1.94
36610--36796	79	2.3	79	75	9	200	27	19	20	33	1.96
39399--39678	7	40.0	7	100	0	560	42	14	28	14	1.84
40512--40656	6	24.2	6	100	0	290	0	16	49	33	1.46
43790--43839	20	2.5	20	96	0	91	42	30	6	22	1.77
44437--44470	16	2.0	18	88	11	54	58	0	29	11	1.33
50201--50244	15	2.9	15	86	3	61	50	0	0	50	1.00
55950--55996	2	24.5	2	87	8	71	46	0	2	51	1.13
56225--56280	21	2.7	21	82	0	67	19	26	17	35	1.94
56299--56350	20	2.6	20	81	6	61	26	19	19	34	1.95
59806--59986	33	5.3	33	80	9	182	44	18	23	14	1.86
59819--59990	19	9.7	19	69	20	104	44	18	22	13	1.85
59779--59988	106	2.0	106	84	1	278	42	19	22	15	1.89
59986--60060	19	4.2	19	70	19	63	14	21	21	42	1.88
59996--60061	19	3.7	19	75	19	79	12	22	19	45	1.83
63513--63568	14	3.6	14	74	21	58	42	23	25	8	1.82
63526--63587	19	3.5	19	70	20	62	46	22	19	11	1.81
63492--63604	33	3.4	33	91	1	163	44	21	23	11	1.84
63600--63644	19	2.4	19	88	0	63	11	13	26	48	1.75
63650--63721	20	3.5	20	86	5	101	13	16	18	51	1.77
64139--64204	27	2.4	27	97	0	123	18	1	30	50	1.56
64309--64519	20	10.4	20	78	7	228	18	18	25	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64309--64519	41	5.2	41	91	1	336	18	18	25	37	1.93
64610--64663	20	2.7	19	75	8	63	16	18	31	33	1.93
70176--70208	16	2.1	16	88	5	50	60	6	6	27	1.44
70188--70245	27	2.1	27	81	12	66	44	18	10	25	1.82

Tables:   1

The End!