genome.fa.s2112.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002112.1 Hibiscus syriacus cultivar Beakdansim tig00004321_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108539

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4126--4167	21	2.0	20	86	4	57	38	14	7	40	1.73
8602--8666	27	2.4	27	89	2	96	30	6	27	35	1.81
9947--9983	19	1.9	19	88	0	56	62	5	5	27	1.39
11913--11977	33	2.0	33	100	0	130	40	3	16	40	1.65
12277--12320	14	3.1	13	81	18	52	50	0	0	50	1.00
12278--12329	18	3.0	17	76	13	52	53	0	0	46	1.00
37632--37727	19	5.1	19	100	0	192	37	0	26	36	1.57
38430--38493	28	2.3	28	84	12	80	39	1	10	48	1.48
38464--38492	13	2.3	13	94	5	51	41	0	10	48	1.37
41557--41622	23	3.0	22	80	6	80	54	13	7	24	1.65
49770--49833	22	2.9	22	92	0	110	40	9	12	37	1.75
51334--51422	44	2.0	44	100	0	178	47	15	16	20	1.83
53362--53457	35	2.6	36	83	6	113	33	13	13	39	1.84
53930--54862	109	9.0	107	77	10	622	21	20	25	32	1.97
53922--54892	98	9.3	104	79	8	881	21	21	25	32	1.98
53925--54892	203	4.7	203	83	7	1104	21	20	25	32	1.98
55308--55784	37	13.9	37	65	22	182	36	12	20	29	1.90
55205--55446	103	2.4	103	81	4	258	40	13	19	26	1.89
55346--55526	65	2.8	65	92	0	290	35	11	20	31	1.89
55411--55766	102	3.5	102	92	0	586	36	12	21	30	1.89
55476--55784	37	8.9	37	68	19	198	36	12	21	28	1.90
55308--55782	204	2.3	202	79	10	563	36	12	21	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55680--55784	36	2.9	36	92	1	165	38	13	23	24	1.91
57284--57354	12	6.1	11	71	18	54	2	12	4	80	0.97
57300--57354	23	2.4	22	82	14	67	1	14	3	80	0.94
57282--57354	23	3.3	23	77	11	64	2	15	4	78	1.02
60883--60962	11	7.3	11	70	20	51	60	2	3	33	1.28
61433--61507	35	2.1	37	85	5	100	30	14	14	40	1.86
62890--62928	14	2.7	15	88	4	53	28	0	0	71	0.86
63036--63091	2	28.5	2	85	3	69	44	1	1	51	1.22
63154--63178	2	12.5	2	100	0	50	48	0	0	52	1.00
63249--63291	18	2.6	17	79	13	54	27	4	4	62	1.35
63245--63295	18	2.8	18	75	19	52	25	5	3	64	1.33
63333--63385	20	2.7	19	80	5	70	18	3	1	75	1.05
66496--66546	13	3.8	14	82	15	63	74	3	17	3	1.12
66494--66546	28	2.0	26	89	10	81	75	3	16	3	1.10
66599--66736	69	2.0	69	92	0	231	39	21	13	24	1.90
67648--67738	32	2.8	32	88	3	130	29	12	21	36	1.90
68666--68823	36	4.4	36	86	4	219	24	20	15	39	1.91
68923--68965	21	2.0	21	90	0	68	32	20	11	34	1.89
68937--69022	36	2.4	36	96	0	154	26	24	13	34	1.93
68745--69122	195	1.9	195	93	0	657	27	19	13	39	1.89
68937--69189	102	2.5	101	81	7	298	30	20	12	36	1.90
68971--69357	166	2.3	166	87	1	560	30	18	11	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69086--69237	65	2.3	65	82	2	180	31	19	11	36	1.88
68941--69438	268	1.9	268	84	4	682	29	18	12	38	1.88
69305--69390	37	2.4	37	84	2	102	26	19	15	38	1.91
69255--69512	102	2.5	102	92	0	417	30	18	13	37	1.89
69549--69653	36	3.0	34	78	10	113	20	20	16	41	1.90
69588--69646	15	3.2	20	68	26	65	18	18	16	45	1.85
69588--69656	36	1.9	36	96	0	129	20	21	15	42	1.89
69732--69977	84	2.9	82	77	5	224	31	23	19	26	1.98
71166--71236	5	15.2	5	74	11	53	19	2	5	71	1.18
71166--71236	9	7.7	9	73	16	56	19	2	5	71	1.18
72982--73034	19	2.9	17	78	15	52	24	3	0	71	1.02
72993--73037	14	3.3	14	79	14	58	24	4	0	71	1.05
73570--73599	2	15.5	2	93	6	53	50	0	0	50	1.00
73570--73616	11	4.2	11	86	10	51	51	0	0	48	1.00
79423--79463	16	2.6	16	84	3	57	58	0	0	41	0.98
87007--87046	21	1.9	21	85	10	55	35	10	2	52	1.48
93029--93068	2	20.0	2	100	0	80	50	0	0	50	1.00
96519--96566	23	2.0	24	84	11	64	25	2	10	62	1.38
99803--99842	20	2.0	20	85	0	53	55	7	0	37	1.29
105083--105128	24	2.0	23	91	4	74	47	26	10	15	1.78
106883--106938	18	3.1	18	94	0	94	23	0	48	28	1.51
106883--106948	18	3.5	20	87	6	77	22	1	48	27	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107024--107064	21	2.0	21	85	0	55	26	0	41	31	1.56
108200--108241	22	2.0	22	85	4	59	38	19	9	33	1.84

Tables:   1

The End!