genome.fa.s2113.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002113.1 Hibiscus syriacus cultivar Beakdansim tig00004323_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66183

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1557--1602	14	3.3	14	81	0	56	26	0	21	52	1.47
1641--1689	21	2.3	21	78	0	53	24	0	30	44	1.54
1658--1705	21	2.3	20	83	16	55	25	0	29	45	1.53
1920--1944	7	3.6	7	100	0	50	64	0	0	36	0.94
4547--4604	30	1.9	30	89	6	91	15	17	18	48	1.82
8552--8610	31	1.9	31	92	0	100	40	6	10	42	1.65
8635--8677	22	2.0	22	95	0	77	51	11	0	37	1.39
8637--8685	22	2.2	22	85	3	62	55	12	0	32	1.37
8625--9295	54	12.4	54	68	18	280	53	13	0	33	1.40
8640--9092	80	5.7	80	87	8	701	53	14	0	32	1.41
8693--8766	22	3.2	22	70	16	60	55	17	0	27	1.42
8759--8812	14	3.6	14	72	18	54	57	5	0	37	1.22
8737--9175	32	14.8	32	71	21	291	53	14	0	31	1.41
8625--9140	166	3.2	166	88	7	803	53	14	0	32	1.41
8801--8843	22	2.0	22	100	0	86	51	13	0	34	1.42
8803--8851	22	2.2	22	88	3	71	55	14	0	30	1.40
8857--8931	22	3.2	22	75	14	69	54	16	0	29	1.42
8933--9074	22	6.1	22	73	13	115	53	16	0	30	1.43
9143--9353	47	4.5	46	79	15	177	51	7	0	41	1.29
9183--9280	22	4.3	22	69	7	79	51	9	0	39	1.34
9222--9383	15	10.5	15	83	11	204	50	1	0	47	1.11
9270--9406	58	2.4	57	90	6	197	50	1	0	48	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11051--11095	19	2.4	19	96	0	81	31	13	31	24	1.93
11308--11365	20	2.7	20	81	10	62	32	18	20	27	1.97
11678--11867	75	2.5	75	84	0	245	26	30	21	21	1.98
14851--14904	21	2.4	22	78	12	56	53	5	0	40	1.24
15062--15101	21	1.9	21	89	0	62	30	15	15	40	1.87
16988--17057	32	2.2	32	94	2	124	30	11	21	37	1.89
25130--25477	156	2.2	156	84	10	449	54	6	10	28	1.60
33923--34002	18	4.2	18	68	16	54	40	2	1	56	1.21
37198--37231	15	2.2	16	94	5	61	38	2	8	50	1.49
47767--47879	29	3.9	29	89	2	165	47	15	19	16	1.82
53537--53577	20	2.0	20	100	0	82	51	4	29	14	1.63
53537--53586	20	2.5	20	93	0	73	48	6	30	16	1.70
54229--54334	45	2.3	46	79	10	112	37	19	14	28	1.91
54730--54839	29	3.8	29	95	2	195	45	16	20	17	1.85
54924--54957	15	2.3	15	94	0	59	14	20	32	32	1.93
55972--56321	127	2.7	127	96	0	637	20	24	22	33	1.97
56725--56824	35	3.0	35	81	5	118	38	3	4	55	1.34
57346--57454	42	2.6	42	89	0	164	23	23	32	20	1.98
57346--57460	21	5.5	21	82	12	137	22	24	33	20	1.97
57464--57511	21	2.3	21	88	0	69	20	12	41	25	1.87
59041--59094	17	3.2	17	78	2	56	59	3	0	37	1.15
59237--59315	33	2.4	30	81	12	86	56	1	0	41	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59237--59314	30	2.4	32	83	12	88	56	1	0	42	1.07
59972--60081	41	2.7	40	90	4	175	18	20	25	36	1.94
59997--60069	20	3.6	20	75	3	83	10	21	27	39	1.87
59976--60081	20	5.2	21	68	7	67	17	19	26	35	1.95
60139--60231	20	4.6	20	82	7	125	12	24	22	39	1.89
60114--60211	41	2.4	41	91	3	153	17	22	23	36	1.94
59944--60211	142	1.9	141	90	3	432	19	23	23	34	1.96
60139--60258	61	2.0	61	96	0	222	15	24	22	38	1.92
60470--60545	6	13.5	6	98	1	117	0	17	53	28	1.43
60695--60952	41	6.3	41	97	0	439	36	24	22	15	1.94
61597--61637	17	2.3	18	83	8	57	31	0	2	65	1.05
64042--64168	51	2.5	49	82	6	139	17	34	26	21	1.95

Tables:   1

The End!