genome.fa.s2114.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002114.1 Hibiscus syriacus cultivar Beakdansim tig00004337_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76732

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7176--7347	21	8.3	21	75	3	143	19	18	27	34	1.95
7213--7367	20	7.6	20	72	4	139	18	20	23	37	1.94
7192--7376	41	4.5	41	96	0	334	20	18	24	35	1.95
7439--7523	40	2.1	40	100	0	170	31	16	22	29	1.96
7633--7701	6	12.0	6	98	1	117	0	17	52	30	1.45
7793--7850	19	3.1	19	70	9	64	43	18	18	18	1.89
7777--7850	38	1.9	38	97	0	139	41	18	17	21	1.90
9276--9339	27	2.4	26	80	14	69	40	1	4	53	1.31
11054--11091	20	1.9	20	89	10	60	47	10	0	42	1.38
11564--11619	28	2.1	28	86	6	80	58	0	0	41	0.98
17493--17754	102	2.5	103	84	5	316	35	19	14	30	1.91
18501--18540	20	1.9	22	85	10	57	27	15	20	37	1.92
18566--18618	20	2.7	20	81	0	70	24	15	28	32	1.95
23759--23792	16	2.1	16	94	0	59	32	8	26	32	1.87
30026--30068	20	2.3	19	81	14	54	48	6	0	44	1.29
31521--31569	20	2.5	20	80	6	55	36	18	18	26	1.94
32882--32925	16	2.8	16	75	0	52	25	9	9	56	1.59
35327--35369	20	2.2	20	91	0	68	34	23	16	25	1.95
41468--41523	25	2.2	25	90	0	85	50	3	8	37	1.51
41640--41726	41	2.1	41	95	4	158	36	13	13	35	1.85
48687--48711	2	12.5	2	100	0	50	52	0	0	48	1.00
51485--51564	29	2.8	29	96	0	142	31	15	18	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54806--54933	18	6.9	18	84	5	139	21	16	30	31	1.95
54806--54884	36	2.2	36	100	0	158	18	18	31	30	1.96
54806--54923	54	2.1	56	85	4	159	20	16	31	32	1.94
61182--61226	23	1.9	24	86	4	65	26	20	24	28	1.99
62332--62362	15	2.1	15	93	0	53	48	6	19	25	1.72
63245--63328	30	2.7	32	76	7	84	13	29	29	27	1.94
71033--71059	2	13.5	2	100	0	54	48	0	51	0	1.00

Tables:   1

The End!