Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002115.1 Hibiscus syriacus cultivar Beakdansim tig00004338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61615

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1850--1910
32
1.9
32
96
0
113
34
11
13
40
1.80
1943--1967
3
8.3
3
100
0
50
64
0
0
36
0.94
7915--7993
23
3.4
22
79
10
95
37
17
13
30
1.89
7911--8000
47
1.9
47
86
13
132
38
16
14
30
1.89
12870--12915
18
2.6
18
82
0
56
26
21
10
41
1.86
14639--14698
31
1.9
31
93
0
102
40
6
10
43
1.64
15234--15286
21
2.6
21
82
5
56
58
1
1
37
1.20
15305--15388
14
6.4
14
69
20
65
55
1
0
42
1.07
15277--15360
40
2.2
37
83
10
98
52
1
1
45
1.16
15256--15415
64
2.6
63
91
6
256
55
1
0
41
1.15
15314--15385
24
2.8
27
80
14
82
52
1
0
45
1.09
15173--15417
64
3.7
63
79
14
223
57
2
0
40
1.16
15373--15423
12
4.3
12
76
18
54
66
1
0
31
1.03
19487--19538
25
2.1
25
89
7
79
25
46
9
19
1.80
19801--19873
30
2.4
30
88
0
110
19
31
13
35
1.91
20440--20496
2
28.5
2
100
0
114
50
0
0
49
1.00
28728--28778
20
2.5
20
100
0
102
25
25
0
49
1.51
28728--28778
10
5.0
11
81
18
74
25
25
0
49
1.51
28725--28783
10
5.9
10
81
0
73
28
25
0
45
1.54
28826--28866
18
2.3
18
91
4
66
29
4
2
63
1.28
30902--30926
3
8.3
3
100
0
50
32
32
36
0
1.58
38813--38853
18
2.1
18
86
13
55
58
4
4
31
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46643--46682
21
2.0
21
85
5
55
35
2
2
60
1.24
46669--46722
27
2.1
26
89
6
83
27
11
7
53
1.63
55095--55747
220
3.0
220
93
3
1136
37
15
24
22
1.93
56635--56682
23
2.1
23
100
0
96
43
25
22
8
1.81
59932--60057
21
5.9
21
87
4
171
24
32
26
16
1.96

Tables:   1

The End!