genome.fa.s2116.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002116.1 Hibiscus syriacus cultivar Beakdansim tig00004339_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161355

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
232--473	54	4.5	54	79	9	271	24	27	22	25	2.00
239--440	27	7.4	26	67	19	110	24	27	22	25	2.00
235--442	110	1.9	111	91	3	348	24	26	23	25	2.00
1188--1352	82	2.0	84	90	4	264	26	26	19	28	1.99
5626--5659	12	2.8	12	90	4	50	38	29	17	14	1.90
10737--10800	28	2.4	28	80	17	73	28	15	7	48	1.73
10858--10938	25	3.2	25	72	10	83	37	38	2	22	1.68
10858--10980	51	2.4	51	84	2	158	34	36	2	26	1.70
10858--10980	25	4.8	25	70	11	81	34	36	2	26	1.70
11912--11948	18	2.1	18	100	0	74	24	16	16	43	1.87
11975--12025	12	4.3	12	76	18	54	31	0	1	66	1.03
12008--12076	25	2.7	27	80	15	83	43	0	1	55	1.08
12014--12076	27	2.5	23	85	12	72	44	0	1	53	1.10
11983--12143	12	12.8	12	68	17	78	40	0	1	57	1.09
11983--12143	64	2.6	63	91	6	249	40	0	1	57	1.09
11983--12143	65	2.6	62	88	10	179	40	0	1	57	1.09
12667--12726	31	1.9	31	89	0	93	45	6	5	43	1.52
19299--19370	33	2.2	33	92	7	128	45	11	16	26	1.81
19545--19573	3	9.7	3	100	0	58	31	0	0	68	0.89
22840--22864	4	6.2	4	100	0	50	76	0	0	24	0.80
25897--25947	20	2.5	22	81	12	63	29	1	7	60	1.36
27114--27152	16	2.4	16	91	0	60	7	15	17	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27167--27229	24	2.6	24	82	0	72	53	20	12	12	1.71
29385--29409	12	2.1	12	100	0	50	16	36	0	48	1.46
30846--30870	10	2.5	10	100	0	50	20	0	0	80	0.72
31713--31760	21	2.3	21	85	0	60	50	10	16	22	1.76
31725--31773	21	2.3	21	92	0	80	36	10	20	32	1.86
35871--35908	17	2.2	18	86	13	53	71	5	7	15	1.28
37393--37430	19	2.1	18	85	14	51	28	21	0	50	1.49
41193--41438	54	4.5	55	82	6	282	25	22	26	25	2.00
41196--41435	112	2.2	109	87	3	338	25	22	26	25	2.00
41554--41711	81	2.0	81	92	2	264	31	21	31	16	1.95
47057--47478	55	7.8	55	82	4	405	29	23	14	32	1.94
65997--66267	64	4.3	63	68	19	195	39	7	8	44	1.63
65936--66281	189	1.8	188	88	4	536	38	6	10	44	1.64
67555--67619	34	2.0	32	82	11	78	49	3	10	36	1.53
75049--75124	31	2.5	31	86	4	109	31	9	10	48	1.69
75873--75929	25	2.2	24	82	17	71	42	5	0	52	1.24
75883--75938	27	2.2	24	81	12	67	41	5	0	53	1.24
77814--77862	22	2.3	22	79	10	57	34	12	2	51	1.51
78200--78246	21	2.2	21	84	3	58	53	0	12	34	1.39
81641--81683	12	3.6	12	83	0	59	13	18	46	20	1.83
81681--81772	2	49.0	2	71	12	61	48	0	0	51	1.00
81788--81824	12	3.0	12	92	4	56	10	16	54	18	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84237--84280	20	2.2	20	87	0	61	52	0	4	43	1.22
84390--84429	21	2.0	21	85	9	57	30	2	12	55	1.50
88568--88618	17	2.9	18	77	16	70	29	7	13	49	1.70
97920--97972	25	2.2	24	83	6	63	24	1	3	69	1.15
108560--108607	19	2.5	20	82	6	62	35	2	18	43	1.62
112360--112407	21	2.4	19	80	13	51	45	4	10	39	1.58
120104--120155	17	3.0	16	81	13	59	32	0	0	67	0.91
120108--120152	14	3.1	15	81	12	58	31	0	0	68	0.89
127539--127591	4	14.0	4	84	11	76	50	22	0	26	1.49
127917--128200	156	1.8	153	83	8	380	30	17	11	40	1.86
128261--128358	36	2.8	36	78	6	103	35	19	12	32	1.89
128610--128737	27	4.6	27	90	5	184	28	10	14	46	1.79
128609--128765	27	5.6	29	86	6	182	29	10	15	44	1.80
128610--128765	54	2.8	56	86	5	201	28	10	15	44	1.80
129056--129280	121	1.9	118	80	8	258	30	14	11	43	1.81
129179--129304	63	2.0	63	89	1	191	33	14	9	42	1.78
129727--129815	35	2.5	35	83	5	106	37	14	11	37	1.82
129727--129804	38	2.1	38	86	6	108	37	11	11	39	1.78
129820--129933	36	3.4	35	71	21	109	22	20	14	42	1.89
130064--130299	43	5.5	44	74	12	181	26	31	18	23	1.98
130067--130392	130	2.5	132	86	6	446	26	30	18	23	1.98
130237--130444	93	2.2	94	93	0	364	26	30	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130615--130666	17	3.0	16	81	13	59	32	0	0	67	0.91
130619--130663	14	3.1	15	81	12	58	31	0	0	68	0.89
138060--138094	15	2.3	15	90	0	52	17	11	31	40	1.85
139803--139833	8	3.9	8	91	0	53	12	25	12	48	1.77
143102--143162	23	2.7	23	82	5	70	29	27	24	18	1.98
143157--143206	21	2.3	22	86	10	68	38	30	10	22	1.86
146817--146875	29	2.0	29	100	0	118	44	25	3	27	1.70
149029--149141	30	3.7	30	80	4	111	35	8	1	53	1.42
149146--149215	29	2.5	26	80	13	77	55	2	4	37	1.34
149266--149380	59	1.9	59	83	10	146	53	0	6	40	1.26
149237--149377	29	4.8	29	70	19	103	52	0	6	40	1.32
149584--149630	19	2.4	19	82	17	60	51	10	0	38	1.37
149595--149631	18	2.0	19	94	5	67	43	13	0	43	1.44
149763--149856	44	2.1	45	94	2	163	46	3	13	36	1.60
150411--150439	12	2.3	13	94	5	51	68	0	0	31	0.89
150278--150462	93	2.0	94	93	1	318	37	14	9	38	1.79
151808--151851	3	14.3	3	86	13	63	63	0	0	36	0.95
153086--153140	23	2.4	22	80	17	58	49	1	1	47	1.23
153800--153839	20	2.0	20	90	4	55	57	0	0	42	0.98
157788--157844	30	1.9	30	88	0	87	42	5	3	49	1.42
161097--161341	43	5.8	42	87	2	303	30	18	25	25	1.98

Tables:   1

The End!