genome.fa.s2117.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002117.1 Hibiscus syriacus cultivar Beakdansim tig00004340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73388

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2095--2128	14	2.3	15	90	5	52	14	11	32	41	1.82
3803--3833	8	3.9	8	91	0	53	12	25	12	48	1.77
7081--7141	23	2.7	23	82	5	70	29	27	24	18	1.98
7136--7185	21	2.3	22	86	10	68	38	30	10	22	1.86
10796--10854	29	2.0	29	100	0	118	44	25	3	27	1.70
13000--13027	2	14.0	2	100	0	56	50	0	0	50	1.00
13020--13151	31	4.3	30	79	4	113	35	8	1	54	1.40
13137--13378	29	7.9	27	66	23	90	53	1	5	40	1.32
13147--13326	30	5.9	30	64	11	87	52	1	5	40	1.32
13259--13378	64	1.9	64	83	10	156	55	0	5	39	1.24
13595--13637	18	2.2	20	92	8	72	44	13	0	41	1.44
13769--13863	45	2.1	45	96	0	172	47	3	13	35	1.59
14421--14449	12	2.3	13	94	5	51	68	0	0	31	0.89
14287--14472	94	2.0	94	93	0	318	36	13	10	39	1.79
15821--15858	3	12.3	3	94	5	67	65	0	0	34	0.93
16908--16942	19	1.9	18	88	11	54	60	0	0	40	0.97
17096--17150	23	2.4	22	80	17	58	49	1	1	47	1.23
17815--17854	20	2.0	20	90	4	55	57	0	0	42	0.98
21853--21909	30	1.9	30	88	0	87	42	5	3	49	1.42
22825--22856	15	2.2	15	94	5	57	50	0	0	50	1.00
25241--25721	43	11.3	43	83	5	541	31	17	24	26	1.97
25241--25743	85	5.9	84	79	8	507	31	17	24	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25241--25757	126	4.0	126	86	4	673	31	17	23	27	1.97
28710--28868	82	1.9	82	81	7	189	32	18	18	30	1.95
31489--31727	41	5.8	41	70	12	175	29	15	21	33	1.95
31766--31856	44	2.1	42	81	4	101	23	13	21	41	1.88
35597--35655	21	2.8	21	86	0	82	20	5	20	54	1.63
35767--35863	43	2.3	43	83	7	117	22	21	21	34	1.97
35783--35879	43	2.3	42	82	5	106	28	21	20	28	1.98
35803--36056	43	5.9	43	83	2	260	29	23	19	27	1.98
36173--36211	21	1.9	21	84	5	53	48	17	15	17	1.81
36697--37181	222	2.1	228	93	3	831	45	8	8	38	1.64
37310--37647	161	2.1	162	89	0	516	40	14	17	28	1.88
37624--37670	20	2.4	19	79	10	58	53	8	19	19	1.70
39880--39922	20	2.1	21	86	4	61	39	11	30	18	1.86
41804--41852	19	2.6	19	93	0	80	30	2	10	57	1.43
41969--43128	197	5.9	198	95	1	2048	35	15	17	30	1.91
41969--43128	395	2.9	395	95	2	2057	35	15	17	30	1.91
44571--44629	12	4.9	12	89	0	91	37	10	33	18	1.85
44568--44629	6	10.3	6	78	0	61	38	9	33	17	1.83
44583--44657	9	8.3	9	75	5	53	37	6	32	24	1.81
44571--44641	36	2.0	36	94	0	124	36	9	33	19	1.85
44579--44656	12	6.2	12	79	8	84	37	7	32	23	1.83
44583--44657	6	12.5	6	81	0	69	37	6	32	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45819--45852	16	2.1	16	88	0	50	47	8	20	23	1.78
46217--46284	23	3.0	23	88	0	100	33	4	22	39	1.74
46581--46625	22	2.0	22	83	8	56	42	11	8	37	1.72
46664--47156	183	2.7	182	97	1	914	33	15	17	33	1.91
47664--47713	25	2.0	25	96	0	91	26	8	22	44	1.80
48098--48134	18	2.1	18	89	0	56	32	5	10	51	1.60
48090--48136	24	2.0	24	86	0	67	34	4	14	46	1.64
48404--48490	39	2.2	39	95	0	156	48	20	13	17	1.81
48917--48984	23	3.0	23	84	0	91	33	5	22	38	1.78
49299--49345	23	2.0	23	84	8	60	36	2	19	42	1.63
48938--49655	361	2.0	361	91	6	1186	40	8	11	39	1.72
49704--49771	23	3.0	23	84	0	91	33	5	22	38	1.78
50130--50202	23	3.2	23	88	0	101	34	4	21	39	1.73
49299--50981	429	3.9	431	97	0	3114	40	7	12	39	1.72
50559--50631	23	3.2	23	92	0	119	34	5	21	38	1.77
49299--50981	859	2.0	857	96	1	3104	40	7	12	39	1.72
51291--51359	28	2.4	29	90	9	115	37	5	20	36	1.77
55258--55316	31	1.9	31	96	0	109	35	8	23	32	1.85
56201--56256	24	2.3	24	96	0	103	30	17	16	35	1.92
56489--56545	30	1.9	30	92	0	96	5	31	26	36	1.79
56529--56566	20	1.9	20	84	10	51	5	26	23	44	1.74
56931--57038	29	3.7	29	96	2	191	38	5	20	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61895--62012	41	2.9	42	82	2	150	19	14	16	49	1.80
62357--62401	23	2.0	23	86	0	63	53	2	2	42	1.25
62442--62502	31	2.0	30	84	9	79	52	3	0	44	1.17
62513--62571	22	2.7	22	81	7	66	52	0	1	45	1.10
63038--63094	26	2.2	26	83	0	69	43	17	17	21	1.88
63147--63174	11	2.5	11	100	0	56	17	28	35	17	1.93
63762--63798	7	4.9	8	87	12	60	72	0	0	27	0.84
63762--63798	15	2.5	15	100	0	74	72	0	0	27	0.84
63793--63822	2	15.5	2	93	6	53	53	0	0	46	1.00
63943--63987	2	22.5	2	100	0	90	51	0	0	48	1.00
64258--64598	178	1.9	176	86	7	480	46	9	3	41	1.54
64552--64595	21	2.1	21	87	4	63	45	2	0	52	1.13
71987--72072	30	2.8	31	81	16	108	33	15	15	36	1.88

Tables:   1

The End!