Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002120.1 Hibiscus syriacus cultivar Beakdansim tig00004345_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92603

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3653--4034
192
2.0
190
96
1
710
30
17
22
29
1.96
5427--5465
20
2.1
18
85
9
51
10
7
17
64
1.48
6991--7048
30
2.0
30
86
3
82
44
8
1
44
1.44
11850--11880
2
15.5
2
100
0
62
51
0
0
48
1.00
13274--13338
25
2.6
26
78
7
80
60
0
3
36
1.13
18628--18695
3
22.3
3
96
3
127
66
0
0
33
0.92
19041--19120
40
2.0
40
97
0
151
31
20
13
35
1.91
22105--22237
66
2.0
66
100
0
266
37
13
6
42
1.69
29624--29658
8
4.4
8
85
0
52
40
2
0
57
1.14
30075--30104
2
15.0
2
92
0
51
46
0
3
50
1.18
35948--36029
32
2.5
31
84
9
94
42
1
0
56
1.07
35933--36008
27
2.9
26
70
21
61
43
0
0
56
0.99
35933--36014
30
3.1
27
69
19
66
42
0
0
57
0.98
37445--37625
89
2.0
89
98
0
353
24
22
18
34
1.96
44007--44084
26
3.2
25
67
22
76
24
23
10
42
1.85
44022--44096
20
3.5
20
70
20
62
26
24
10
38
1.88
44667--44727
30
2.0
31
83
3
79
65
14
14
4
1.43
44698--44739
12
3.6
11
87
9
57
69
11
14
4
1.34
45917--45966
4
13.0
4
83
8
68
50
26
0
24
1.50
46435--46673
105
2.3
102
82
9
272
30
19
12
37
1.89
46619--46738
36
3.4
36
81
4
120
30
20
12
36
1.89
46637--46738
36
2.9
36
82
4
129
33
19
11
35
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46987--47333
29
11.9
28
67
20
160
29
10
14
45
1.78
46961--47458
149
3.3
150
85
7
632
28
11
14
45
1.79
47279--47336
27
2.2
26
82
11
73
27
8
15
48
1.74
47287--47343
27
2.1
27
93
0
96
31
7
15
45
1.73
47331--47457
37
3.6
37
71
16
126
30
11
12
44
1.78
47299--47520
67
3.4
65
86
6
281
29
11
13
45
1.77
47568--47792
120
1.9
119
80
8
269
30
13
12
43
1.81
47690--47814
64
2.0
63
88
1
187
32
13
11
43
1.79
47971--48029
15
3.9
15
95
0
100
30
20
5
44
1.73
48365--48446
28
2.9
28
83
3
94
24
12
13
50
1.76
48503--48810
135
2.3
133
88
5
453
26
30
18
24
1.98
48491--48810
130
2.4
129
87
5
453
25
30
18
24
1.98
58065--58107
15
2.9
15
96
0
77
25
16
25
32
1.96
58209--58248
16
2.6
16
88
4
55
30
20
12
37
1.89
59715--59756
17
2.5
17
92
0
66
42
0
11
45
1.41
71852--71901
26
2.0
26
84
4
66
32
4
14
50
1.61
79512--80131
260
2.4
253
82
9
778
26
12
19
41
1.87
83837--83870
15
2.2
16
89
5
52
14
2
0
82
0.79
87106--87172
35
1.9
35
96
0
125
38
14
16
29
1.89

Tables:   1

The End!