genome.fa.s2121.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002121.1 Hibiscus syriacus cultivar Beakdansim tig00004347_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35815

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2253--2333	29	2.8	29	94	3	137	43	17	22	17	1.88
2418--2451	15	2.3	15	94	0	59	14	20	32	32	1.93
4404--4457	24	2.2	24	96	0	99	29	33	16	20	1.95
9214--9294	29	2.8	29	94	3	137	43	17	22	17	1.88
11670--11754	23	3.8	22	75	7	73	27	32	20	20	1.97
13051--13129	30	2.5	32	78	13	85	49	1	1	48	1.17
13672--13727	24	2.4	23	80	16	71	37	0	5	57	1.22
14265--14314	23	2.2	23	85	0	64	36	14	12	38	1.83
14342--14396	23	2.4	23	84	0	83	30	12	9	47	1.73
14391--14754	87	4.2	87	92	0	532	32	11	10	45	1.74
14604--14654	23	2.2	23	85	0	66	37	13	9	39	1.78
14247--14760	174	3.0	173	87	2	729	33	12	10	44	1.76
16146--16208	15	4.1	15	81	6	65	50	4	1	42	1.32
20507--20627	63	1.9	63	83	6	156	51	0	4	43	1.26
22307--22340	12	2.8	12	100	0	68	5	26	26	41	1.78
22395--22446	21	2.5	21	81	3	61	38	19	25	17	1.93
22435--22569	20	6.7	20	79	7	121	34	24	17	23	1.96
22432--22569	61	2.3	61	85	0	195	35	23	17	23	1.95
22739--22780	22	1.9	22	95	0	75	21	40	16	21	1.91
23043--23111	20	3.5	20	89	0	102	21	18	24	34	1.96
23044--23121	20	3.9	20	87	0	75	20	17	21	39	1.92
23258--23312	25	2.2	24	78	15	58	20	9	18	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24441--24485	18	2.5	18	88	0	72	26	44	15	13	1.83
24961--25027	20	3.4	20	81	2	73	38	23	22	14	1.92
24980--25081	33	2.8	34	75	22	93	43	21	21	13	1.87
24961--25081	19	6.6	19	75	13	83	42	22	20	14	1.87
25094--25150	14	3.8	14	74	17	60	10	14	24	50	1.73
25095--25166	32	2.2	33	95	2	128	12	16	22	48	1.79
25151--25206	20	2.8	19	86	7	76	17	25	21	35	1.95
27034--27069	14	2.6	14	90	0	54	30	0	22	47	1.52
27206--27254	19	2.6	19	96	0	89	51	16	18	14	1.77
27206--27261	19	2.9	19	86	5	78	51	16	19	12	1.75
27292--27387	20	4.8	20	75	7	97	17	20	20	40	1.91
27280--27367	40	2.4	36	83	12	108	15	20	21	42	1.89
27292--27387	40	2.4	41	81	8	117	17	20	20	40	1.91
27601--27650	20	2.5	20	80	0	73	22	18	22	38	1.94
28480--28533	24	2.2	24	90	0	81	22	16	20	40	1.91
28708--28732	12	2.1	12	100	0	50	72	0	28	0	0.86
31020--31150	19	7.7	19	66	23	85	44	18	21	16	1.87
31020--31146	33	3.8	33	80	4	166	44	18	21	16	1.87
31023--31153	66	2.0	66	92	0	217	43	17	21	17	1.88
31146--31235	33	2.7	33	92	0	144	13	21	21	44	1.85
31175--31235	19	3.5	19	72	21	69	11	22	21	44	1.84
31161--31217	14	3.7	14	72	20	51	8	22	22	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31342--31378	14	2.6	15	87	12	60	45	21	0	32	1.52
32734--32939	42	4.9	41	72	10	157	23	17	35	22	1.95
32734--32800	21	3.2	21	68	4	55	19	20	35	23	1.95
32764--32939	84	2.1	84	95	0	316	24	16	36	22	1.94
33171--33323	78	1.9	82	89	5	242	43	16	13	26	1.85
35012--35110	33	3.0	33	84	1	135	40	21	25	13	1.89
35082--35132	19	2.7	19	96	0	93	45	21	21	11	1.84
35708--35815	20	5.4	20	84	4	110	25	18	25	31	1.98

Tables:   1

The End!