Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002122.1 Hibiscus syriacus cultivar Beakdansim tig00004348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61160

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4583--4619
19
1.9
19
94
0
65
32
29
16
21
1.95
4746--4787
21
2.0
21
100
0
84
47
23
14
14
1.80
4820--4853
16
2.1
16
94
0
59
29
23
14
32
1.94
6854--6908
28
2.0
28
85
7
76
36
1
10
50
1.48
6852--6910
15
4.2
14
72
20
52
38
1
10
49
1.47
11758--11790
6
5.5
6
92
0
57
0
33
3
63
1.10
16701--16734
17
1.9
18
88
5
52
47
11
11
29
1.76
25173--25224
23
2.3
23
89
0
77
17
26
28
26
1.97
26573--26697
45
2.8
45
93
0
205
26
31
11
31
1.91
26619--26715
27
3.9
27
68
22
86
28
28
10
31
1.90
26658--26717
27
2.2
27
90
0
93
30
26
10
33
1.89
26808--26907
36
2.7
35
87
7
146
48
18
5
29
1.69
29056--29114
31
2.1
29
84
15
79
25
22
15
37
1.93
37278--37347
2
35.0
2
100
0
140
50
0
0
50
1.00
39088--39150
31
2.0
31
84
0
81
22
9
11
57
1.62
42764--42788
12
2.1
12
100
0
50
36
8
16
40
1.77
47886--47996
11
9.5
11
67
26
59
24
24
27
24
2.00
47885--47975
24
3.8
24
100
0
182
25
24
29
20
1.99
47897--47964
13
5.5
13
68
25
58
25
26
29
19
1.98
47995--48039
23
2.0
23
86
0
63
37
31
11
20
1.87
47983--48040
29
2.0
29
96
0
107
36
31
12
20
1.89
50458--50513
14
3.9
15
83
4
55
23
0
32
44
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50592--50652
7
8.7
7
83
7
52
22
0
26
50
1.49
55081--55155
35
2.1
36
82
7
100
44
21
0
34
1.53
55151--55227
35
2.2
35
83
0
100
37
0
19
42
1.51
55629--55698
33
2.1
33
91
0
113
17
11
21
50
1.77

Tables:   1

The End!