Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002123.1 Hibiscus syriacus cultivar Beakdansim tig00004349_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100069

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7069--7116
18
2.6
17
81
18
53
41
0
0
58
0.98
7072--7119
17
2.8
17
77
22
55
41
0
0
58
0.98
7607--7637
15
2.1
15
94
5
55
74
0
6
19
1.03
12404--12532
28
4.5
28
78
9
109
37
3
2
56
1.28
12404--12532
58
2.2
56
80
10
136
37
3
2
56
1.28
12593--12652
28
2.1
28
84
6
77
45
1
0
53
1.10
12607--12665
28
2.0
30
87
6
86
45
3
0
50
1.18
12819--12861
14
3.0
14
86
3
59
51
0
2
46
1.13
12897--12969
28
2.6
29
84
2
85
60
2
6
30
1.37
15148--15192
19
2.4
19
96
0
81
31
15
17
35
1.92
15503--15572
19
3.7
19
96
1
115
52
7
11
28
1.63
15503--15593
37
2.4
38
83
1
94
48
9
14
27
1.75
15716--15780
18
3.4
18
74
12
58
27
4
18
49
1.67
15718--15792
39
1.9
39
94
0
132
25
5
20
49
1.69
17268--17336
2
34.5
2
100
0
138
50
0
0
49
1.00
17623--17721
23
4.3
23
74
5
92
19
23
24
33
1.97
17623--17721
46
2.2
46
85
7
130
19
23
24
33
1.97
17623--17753
23
5.7
23
74
9
88
19
23
23
32
1.97
19143--19186
18
2.5
17
81
7
52
40
2
2
54
1.25
19306--19343
3
12.7
3
100
0
76
34
0
0
65
0.93
20006--20049
18
2.4
18
81
7
54
75
0
4
20
0.98
30484--30522
17
2.2
18
86
4
53
74
10
10
5
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31263--31298
17
2.1
17
100
0
72
52
16
19
11
1.73
31634--31696
23
3.0
20
71
15
63
52
15
4
26
1.63
31791--31844
29
1.9
27
92
3
81
53
11
11
24
1.68
32198--32245
24
2.0
24
95
0
87
33
6
29
31
1.82
36002--36049
2
25.5
2
81
12
57
45
0
2
52
1.12
43279--43341
22
2.9
22
88
4
92
25
20
26
26
1.99
43613--43673
30
2.0
30
90
6
97
40
4
11
42
1.62
49730--49813
21
3.8
22
77
10
73
22
36
23
16
1.94
52224--52284
30
2.0
30
90
6
97
40
4
11
42
1.62
53377--53409
16
2.0
17
88
5
50
45
0
24
30
1.53
53801--53845
21
2.1
22
87
4
65
22
24
31
22
1.99
55482--55532
23
2.2
23
100
0
102
29
17
21
31
1.96
61542--61594
23
2.3
23
81
9
56
18
3
1
75
1.05
62744--62775
11
3.0
11
95
4
57
84
0
15
0
0.63
65001--65102
21
4.9
21
90
4
161
20
37
18
23
1.94
65119--65225
20
5.3
20
90
0
169
16
30
23
28
1.96
66262--66304
22
2.0
22
100
0
86
34
18
18
27
1.95
68420--68495
21
3.6
21
98
0
143
19
42
17
21
1.90
71208--71246
20
2.0
20
90
10
62
17
30
33
17
1.94
71969--72029
22
2.8
22
85
5
79
29
21
24
24
1.99
72339--72371
16
2.0
17
88
5
50
45
0
24
30
1.53
72770--72817
25
1.9
25
91
0
78
20
18
22
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81521--81565
20
2.2
20
100
0
90
80
15
4
0
0.87

Tables:   1

The End!