genome.fa.s2125.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002125.1 Hibiscus syriacus cultivar Beakdansim tig00004353_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46441

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158--239	21	4.0	21	72	3	76	21	20	34	23	1.97
149--230	41	2.0	42	85	2	112	20	19	37	21	1.94
701--795	30	3.0	31	77	10	120	44	22	20	13	1.86
768--835	20	3.5	20	89	2	102	35	25	20	19	1.96
842--944	53	1.9	53	82	3	127	22	20	16	40	1.91
880--925	19	2.4	19	85	3	56	26	17	19	36	1.94
859--960	53	1.9	53	91	0	168	19	20	18	41	1.91
880--962	20	4.5	20	72	20	81	21	19	20	38	1.93
2800--2859	20	3.0	20	87	2	86	50	21	16	11	1.77
2879--2925	20	2.3	20	88	0	67	21	19	23	36	1.95
2902--2980	34	2.3	34	95	0	140	18	22	20	37	1.94
3506--3637	20	6.6	20	80	3	140	22	19	19	37	1.94
3634--3679	21	2.2	21	88	0	65	36	17	28	17	1.92
4540--4637	21	4.8	20	74	3	79	36	23	18	21	1.95
4604--4814	20	10.6	20	82	7	232	36	26	18	19	1.95
4604--4814	79	2.6	81	82	5	243	36	26	18	19	1.95
4643--4831	61	3.2	58	85	6	229	34	25	17	21	1.95
5337--5522	20	9.3	20	84	4	223	35	26	17	19	1.95
8735--8798	20	3.2	20	82	4	92	46	15	25	12	1.81
8733--8797	21	3.1	21	82	4	96	47	15	26	10	1.78
8733--8858	19	7.1	19	67	24	78	45	19	24	11	1.82
8774--8853	31	2.5	32	95	4	144	47	20	22	10	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8870--8926	14	3.7	14	70	20	51	10	24	21	43	1.83
8854--8933	33	2.4	33	93	0	133	10	21	21	47	1.79
8914--8987	21	3.5	21	80	7	96	13	21	17	47	1.82
9067--9137	33	2.2	33	94	0	124	46	19	23	9	1.80
9514--9706	20	9.6	20	84	5	237	18	18	27	35	1.94
9797--9846	18	2.8	18	96	3	93	10	18	24	48	1.78
13207--13299	48	1.9	49	91	4	154	29	9	4	56	1.50
15729--16632	447	2.0	448	93	2	1535	21	22	27	28	1.99
19861--20059	4	49.0	4	67	16	79	23	5	5	65	1.34
19909--19963	19	2.9	19	81	5	67	21	7	1	69	1.23
19857--19964	42	2.7	40	80	11	123	22	6	4	66	1.33
19909--20036	23	5.8	23	74	8	88	23	5	4	66	1.32
19973--20060	27	3.4	27	75	12	103	22	4	6	65	1.35
19956--20060	23	4.4	23	77	11	104	24	3	6	64	1.34
20937--20971	18	1.9	18	88	0	52	25	31	20	22	1.98
24656--24794	29	4.8	29	94	1	244	17	20	15	45	1.86
25173--25329	64	2.5	63	80	10	185	26	18	20	35	1.95
25363--25419	21	2.7	21	100	0	114	31	21	19	28	1.97
26170--26218	12	4.3	12	77	12	50	16	0	46	36	1.47
26341--26413	23	3.2	23	92	0	119	21	12	12	53	1.71
26808--26843	4	9.0	4	100	0	72	75	0	0	25	0.81
29527--29552	9	2.9	9	100	0	52	7	23	46	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29567--29625	20	2.9	20	89	2	91	33	22	25	18	1.96
29567--29625	9	5.9	10	71	15	50	33	22	25	18	1.96
30341--30536	97	2.0	97	97	0	374	28	23	15	31	1.96
36835--36860	13	2.0	13	100	0	52	23	23	30	23	1.99
36872--36923	19	2.7	19	85	8	70	25	25	30	19	1.98
38976--39034	23	2.6	23	84	10	68	61	3	0	35	1.13
42042--42093	21	2.5	21	96	0	95	30	19	21	28	1.97
42968--43088	61	2.0	61	90	3	190	29	28	11	30	1.92
44424--44555	45	2.9	45	78	8	126	33	15	25	26	1.95

Tables:   1

The End!